Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq3710 367 5e-99 seq1 86.0 2e-14 >seq3710 Length=1686 Score = 367 bits (406), Expect = 5e-99 Identities = 415/545 (76%), Gaps = 26/545 (5%) Strand=Plus/Minus Query 52 CGGCATTCGGAGTTTGGTTGATTTCGG--TAAGCTTG--TGGGCCCCCTAGACCATC-CA 106 ||| |||||||||||| | || ||| ||| || | | ||||| | ||||| || Sbjct 1083 CGGTATTCGGAGTTTGCT--ATGGCGGGGTAATCTGCAATAGACCCCCCA-ACCATGACA 1027 Query 107 GTGCTCTACCTCCGG-GAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAAC 165 |||||||||| ||| | || ||||| | | || |||||||| |||||| |||||| Sbjct 1026 GTGCTCTACCCCCGAAGGTGAGACACGAGGCACT--ACCTAAATAGTTTTCGGAGAGAAC 969 Query 166 CAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTT 225 ||||||| | | ||||| || ||||||||||||||||||||| ||||||||| | |||| Sbjct 968 CAGCTATTTCCAGGTTTGTTTAGCCTTTCACCCCTATCCACAGCTCATCCCCTAACTTTT 909 Query 226 CAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGAT 285 |||| | ||||||||||| |||||| || ||||| ||||| |||| |||||||| Sbjct 908 CAACGTTAGTGGGTTCGGACCTCCAGTACGTGTTACCGCACCTTCATCCTGGCCATGGAT 849 Query 286 AGATCACTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTC 345 ||||||| | | ||||||||| | || ||| | ||||||||||||||||||||||| Sbjct 848 AGATCACCTGGTTTCGGGTCTACGCCCAGCAACTGA-ACGCCCTATTCGGACTCGCTTTC 790 Query 346 GCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCT 405 |||||| || ||| | || |||||| || || || |||| || |||| | | |||| | Sbjct 789 GCTACGCCTGCCCTATAC-GGTTAAGCTTGCTACTGAACG-TAAGTCGCTGACCCATTAT 732 Query 406 TCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGC 465 ||||||| ||||||||||| | || || |||||||| | ||||| || Sbjct 731 ACAAAAGGTACGCCGTCACC----CCTTACGAG--------GCTCCGACTGTTTGTATGC 684 Query 466 ACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGG 525 | ||||||||| |||||||||||||| || ||||| |||||| |||||||||||||| Sbjct 683 ATGCGGTTTCAGGATCTATTTCACTCCCCTCCCGGGGTTCTTTTCGCCTTTCCCTCACGG 624 Query 526 TACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATT 585 |||| || | |||||||||| |||||||||||| ||| || ||||||| ||| ||| Sbjct 623 TACTGGTTCACTATCGGTCAGTCAGGAGTATTTAGCCTTGGAGGATGGTCCCCCCATATT 564 Query 586 CACAC 590 || || Sbjct 563 CAGAC 559 >seq1 Length=129477 Score = 86.0 bits (94), Expect = 2e-14 Identities = 117/162 (72%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTAC 115 ||||||||||| || ||| ||||| || | ||||||||| || |||||||||| Sbjct 121170 ATTCGGAGTTTCCAAGAATTCAGTAAGTTTTTACGCCCCCTAGCTCAATGAGTGCTCTAC 121111 Query 116 CTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCAC 175 | || || | | | ||| || | ||| |||||| ||| ||||||||||| | Sbjct 121110 C-CCAAAAAAAGATTTTAAATGCTCTACTTCAATAGATTTCGCGGAAAACCAGCTATCTC 121052 Query 176 GAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCC 217 ||||||||| ||||||||| |||| ||||| ||||| || Sbjct 121051 TGAGTTTGATTAGCCTTTCACTCCTAACCACAAATCATCTCC 121010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817499286784