Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq3710 443 5e-122 >seq3710 Length=1686 Score = 443 bits (490), Expect = 5e-122 Identities = 357/417 (86%), Gaps = 12/417 (3%) Strand=Plus/Minus Query 4 CCGATCCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAG 63 || |||||||| |||| || ||||||||| ||||| |||| ||||||| |||||||| | Sbjct 936 CCTATCCACAGCTCATCCC-CTAACTTTT-CAACGTTAGTGGGTTCGGACCTCCAGTACG 879 Query 64 TAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTC 123 | |||||| ||||| || |||| |||| ||||||||| || ||||| |||||||| | Sbjct 878 T-GTTACCGCACCTT-CATCCTGGCCAT-GGATAGATCACCTGGTTT-CGGGTCTACG-C 824 Query 124 CCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTATTCGGTTAAG 183 ||||| ||| |||||||| | |||||||||| |||||||||| |||||| |||||||| Sbjct 823 CCAGCAACTGAACGCCCTATTCGGACTCGCTTT-CGCTACGCCTGCCCTATACGGTTAAG 765 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 ||| || |||||| |||||||||||||||||||||||||||||||| ||||||| | Sbjct 764 CTT-GCTACTGAACGTAAGTCGCTGACCCATTATACAAAAGGTACGCCGTCACCC--CTT 708 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 | |||||| |||| ||||| |||| |||||||||||||||||||||||||||| |||| Sbjct 707 ACGAGGCTCCGACTGTTTGTATGCATGCGGTTTCAGGATCTATTTCACTCCCCTC-CCGG 649 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct 648 GGTTCTTTTCGCCTTTCCCTCACGGTACTGGTTCACTATCGGTCAGTCAGGAGTATTTAG 589 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||||||||||||||||||||||||||||| | | |||| ||| |||||||| Sbjct 588 CCTTGGAGGATGGTCCCCCCATATTCAGACAGGATAACACGTGTCCCGCCCTACTCG 532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241531202944