Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq3710 183 7e-44 seq1 123 6e-26 >seq3710 Length=1686 Score = 183 bits (202), Expect = 7e-44 Identities = 288/404 (71%), Gaps = 10/404 (2%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||| || ||| |||||||||||| ||||||||||| || || ||| | | Sbjct 1532 CGACTACGACTTTCGTCCTCGCCTTAGGGGCCGACTCACCCTACGCCGATGAACGTTGCG 1473 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGA--TTCCCACCCGTCACACGCTACTCATGCC 118 |||| |||||| ||||| ||| ||| | ||| | | ||||||||||| | Sbjct 1472 TAGGAAACCTTGGGCTTACGGCGAGGGGGCCTTTCACCCCCTTTAT-CGCTACTCATGTC 1414 Query 119 TGCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| |||| | | ||||| ||| | | || |||| |||| | || || Sbjct 1413 AGCATTCGCACTTCCGATACCTCCAGCACCCTTT-ACAAGGCACCTTCGCAGGCTTACGG 1355 Query 178 GACGCTCCCCTACCCAACCACACAGGTTGC---CACAGCTTCGGCGGATAACTTAAGCCC 234 |||||| |||||| | | || | || | ||||||||| ||| |||| |||| Sbjct 1354 AACGCTCTCCTACCATGCGAGCAAGCTCGCATCCGCAGCTTCGGTATATAGCTTA-GCCC 1296 Query 235 CGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGAT 294 || ||||| || |||| | | ||| || |||||||||||||||| ||||| |||| | Sbjct 1295 CGTTACATCTTCCGCGCAGGACGACTCGATCAGTGAGCTATTACGCTTTCTTTAAAGGGT 1236 Query 295 GGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGT 354 ||||||||| |||||||||||||| ||| | || |||| || ||||||||| || Sbjct 1235 GGCTGCTTCTAAGCCAACCTCCTGACTGTTTTAGCCTTCCCACTTCGTTTCCCACTTAGC 1176 Query 355 CACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || | || ||| ||||||||| | |||||| ||||||||||| Sbjct 1175 CA-TATTTGGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 1133 >seq1 Length=129477 Score = 123 bits (136), Expect = 6e-26 Identities = 143/189 (76%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAG 271 ||||||| || |||||| | || |||||| | ||||| || ||| ||||| |||| Sbjct 121411 GCTTCGGTAAATTTCTTAAGTCTCGATACATTTTAGGCGCAAAAAAACTAGACCAATGAG 121352 Query 272 CTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAA 331 ||||||||| ||||| ||||||||||||||||||||| |||| |||||||| Sbjct 121351 CTATTACGCTTTCTTTAAAGGATGGCTGCTTCCAAGCCTACCTACTGGTTGTAATTATTT 121292 Query 332 CTCCACATCCTTTCCCACTGAG-TCACCACTTAGGGGCCTTAGCTGAT-GATCTGGGCTG 389 | ||| |||||| |||| || | | |||| | ||||||| ||| |||||||||| Sbjct 121291 TTTCACTTCCTTTTTCACTTAGAATATTATTTAGAGACCTTAGC-GATCAATCTGGGCTG 121233 Query 390 TTTCCCTCT 398 ||||||||| Sbjct 121232 TTTCCCTCT 121224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177534749184