Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq3710 471 1e-130 seq1 109 2e-21 seq938 89.7 2e-15 >seq3710 Length=1686 Score = 471 bits (522), Expect = 1e-130 Identities = 429/529 (81%), Gaps = 10/529 (2%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGA-CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||||||||| |||||| |||| |||||| ||||||||||||||| |||||||| |||| Sbjct 795 CGAGTCCGAATAGGGCGTTCAGTTGCTGGGCGTAGACCCGAAACCAGGTGATCTATCCAT 854 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| | Sbjct 855 GGCCAGGATGAAGGTGCGGTAACACGTACTGGAGGTCCGAACCCACTAACGTTGAAAAGT 914 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| Sbjct 915 TAGGGGATGAGCTGTGGATAGGGGTGAAAGGCTAAACAAACCTGGAAATAGCTGGTTCTC 974 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGTTATGG 240 |||||||||||||||||||||||||| || ||||| |||||||||||||||||| |||| Sbjct 975 TCCGAAAACTATTTAGGTAGTGCCTCGTGTCTCACCTTCGGGGGTAGAGCACTGTCATGG 1034 Query 241 CTAGGGGGTC-ATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTTAC 299 | ||||||| ||||| ||||| |||| ||||||||||||| | | ||| | Sbjct 1035 TTGGGGGGTCTATTGCAGATTACCCCGCCATAGCAAACTCCGAATACCGAAGAGTGCAAT 1094 Query 300 CGCGGGAGTGAGGGCAT-GGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTA 358 | |||||| | | ||| ||||||||| ||||| | ||||| || || || ||| Sbjct 1095 CACGGGAGACA-GACATCGGGTGCTAACGTCCGGTGTCAAGAGGGAAACAACCCAGACCG 1153 Query 359 TCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAG 418 ||||||||| ||| |||| | ||||||| | |||||||| || ||||| |||| Sbjct 1154 CCAGCTAAGGTCCCCAAAT-ATGGCTAAGTGGGA--AACGAAGTGGGAAGGCTAAAACAG 1210 Query 419 CTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCG 478 |||| |||||||| |||||||||| | |||||||| |||||| |||||||| ||| Sbjct 1211 TCAGGAGGTTGGCTTAGAAGCAGCCA-CCCTTTAAAGAAAGCGTAATAGCTCACTGATCG 1269 Query 479 AGGAGTCGGGCGTGGATAAT-AATCGGGTATTAAGTTGTCTACCGAAGC 526 || ||| ||| ||| || | |||| |||| | | ||||||||| Sbjct 1270 AGTCGTCCTGCGCGGAAGATGTAACGGG-GCTAAGCTATATACCGAAGC 1317 >seq1 Length=129477 Score = 109 bits (120), Expect = 2e-21 Identities = 249/367 (68%), Gaps = 7/367 (2%) Strand=Plus/Plus Query 116 AAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGG 175 ||||| || ||||| ||||| |||| |||||||||||| |||||| || |||||||| Sbjct 121003 AAAATATGGAGATGATTTGTGGTTAGGAGTGAAAGGCTAATCAAACTCAGAGATAGCTGG 121062 Query 176 TTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATCGGGGGTAGAGCACTGT 235 || || ||||| ||||| | |||| || | | ||| | ||||||||||||| Sbjct 121063 TTTTCCGCGAAATCTATTGAAGTAGAGCATTTAAAATCTTTTTTTGGGGTAGAGCACTCA 121122 Query 236 TATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTT 295 | ||||||||| | | |||||| || ||| ||||||||||| | | | Sbjct 121123 TTGAGCTAGGGGG-CGTAAAAACTTACTGAATTCTTGGAAACTCCGAATACAAAAAAACG 121181 Query 296 TTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGA 355 ||| || || | || ||||||||| | | ||||| || | || || Sbjct 121182 TTATTTAAATAGACAGACATTAGGCGCTAAGGTCTATTGTCAAGAGGGAAACAGCCCAGA 121241 Query 356 CT-ATCAGCTAAGGCCCCGAAATGACA-GCTAAGTTAAACTAACGAAGTCTGATTGCTAA 413 | ||| ||||||| | | |||| | | |||||| ||| || ||||| | | Sbjct 121242 TTGATC-GCTAAGGTCTCTAAATAATATTCTAAGTGAAA--AAGGAAGTGAAAAAATAAT 121298 Query 414 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 ||| | || | || |||||||||||||||| || |||||||| |||||| |||||| | Sbjct 121299 TACAACCAGTAGGTAGGCTTGGAAGCAGCCA-TCCTTTAAAGAAAGCGTAATAGCTCATT 121357 Query 474 AGTCGAG 480 ||| || Sbjct 121358 GGTCTAG 121364 >seq938 Length=12782 Score = 89.7 bits (98), Expect = 2e-15 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||||| ||||||||| ||||| ||| |||| ||||| || |||| Sbjct 132 AGACCCGAAACTGAGTGATCTAACCATGAACAGATTGAAAAATAGGTAAAACTATTTGGA 73 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || ||||| ||| |||| | ||||| || ||||| ||||| |||| |||||||||| Sbjct 72 GGATCGAACTCACATATGTGGCAAAATATGGAGATGATTTGTGGTTAGGAGTGAAAGGCT 13 Query 154 AAACAAACT 162 || |||||| Sbjct 12 AATCAAACT 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689506379264