Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq1 185 3e-44 >seq1 Length=129477 Score = 185 bits (204), Expect = 3e-44 Identities = 339/494 (69%), Gaps = 41/494 (8%) Strand=Plus/Minus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||||| | |||||||||| ||| ||||| | |||||||||| |||||||| |||| Sbjct 122370 ACCTTTGTACACCTCCGTTACTCTTTAGGAGGTGA-CCGCCCCAGTCAAACTACCAACCA 122312 Query 136 GGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAGTGGT 195 ||||||| || | || |||| ||| | | | |||||||| Sbjct 122311 TACACTGTCT---------AT--TTAAAAAATATTAGTTATTTATTTTAATAAGAGTGGT 122263 Query 196 ATTTCAACAACGACTCCACAACC-ACTAGCGT---GGCCGCATCATAGTCTCCCACCTAT 251 ||||||| | || |||| |||||||| || | | || | |||| ||| Sbjct 122262 ATTTCAAGAGTATCTAAACAATTTACTAGCGTAAAGGTCTAAACAAT---TACCACTTAT 122206 Query 252 CCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTT 310 ||||||| | | ||| ||||| ||| | |||| ||||| | |||||||||| Sbjct 122205 GCTACACATATTAGATAAAATAACAATATAAAGATGTAGTAAAGGTTCACGGGGTCTTTC 122146 Query 311 CGTCCTGCCGC-GCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGT 369 |||| | | ||| | ||||||| || || | ||| ||||| | | || | | Sbjct 122145 CGTCTAACTATAGAGAATCC-GCATCTTCACGGATATTTCAAATTCACTGAGTCTATATT 122087 Query 370 TGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAAT 429 |||||||| ||| |||||||| |||||| ||||||||||||||||||||||||||||| Sbjct 122086 GGAGACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAAT 122027 Query 430 TTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGC 489 ||||||||||||||| || | |||||| ||||||||||||||| |||| ||| Sbjct 122026 TTCGCTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGACTTCCATT------ 121973 Query 490 CTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTC 549 | || || || |||| |||| |||||||||||||||||| ||| Sbjct 121972 -------------TAATGCGCAAACATTTCCTTTTAATCTTCCAGCACCGGGCAGGTGTC 121926 Query 550 AGTCCGTATACCTC 563 || || ||||| || Sbjct 121925 AGACCCTATACATC 121912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702305670016