Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1421 486 6e-135 seq428 138 3e-30 >seq1421 Length=10067 Score = 486 bits (538), Expect = 6e-135 Identities = 423/516 (82%), Gaps = 21/516 (4%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 || |||||||||||| | ||| | || ||||| | || ||||||||||||||||| Sbjct 3824 GTTCTCATTCCAATTGCCCGACTCGAA-GAGCCAGAGCATTGTTATTTATTGTCACTACC 3766 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 3765 TCCCTGTGTCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 3706 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||| ||||||||||||||||||| |||||||||||||||||||||||| || ||||||| Sbjct 3705 TTCTAAGGCTCCCTCTCCGGAATCAAACCCTAATTCCCCGTTACCCGTTAATGCCATGGT 3646 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||| |||||||||||| |||| |||||||||||||| | | || ||| || Sbjct 3645 AGGCCCATATCCTACCATCCAAAGCTGATAGGGCAGAAACTCAATCGATTTATC----GC 3590 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGC--CCCGAAG--GGC 294 ||| || ||||| || ||||||||||| ||| || | | | ||||||| || Sbjct 3589 GCAAAGC---GCGATCCGCACAGTTATTATGACTCAACACAATACCAGCCCGAAGACTGC 3533 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGT 349 |||| ||| ||||||||||| | ||| |||| ||| ||| || |||||| Sbjct 3532 ATTGG-TTTCAATCTAATAAATGCTACCCGCCCGACAAGCAGTTGGGTATTGATGCATGT 3474 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAAC 409 ||||||||||||||||| |||| |||||| |||||||||||||||| | | || ||||| Sbjct 3473 ATTAGCTCTAGAATTACTACGGGTATCCAAGTAGTAAGGTACTATCGAGTGGACTATAAC 3414 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATG 468 |||| ||||||||||||||||||||||| ||| | | || ||||||||||||||||||| Sbjct 3413 TGATATAATGAGCCATTCGCAGTTTCACAGTACAAAAGTGTTTATACTTAGACATGCATG 3354 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||| ||||||||||||||| Sbjct 3353 GCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 3318 >seq428 Length=25455 Score = 138 bits (152), Expect = 3e-30 Identities = 87/94 (93%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCC 184 ||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||| Sbjct 19862 AGGCTCCCTCTCCGGAATCAAACCCTAATTCCCCGTTACCCGTTAATGCCATGGTAGGCC 19803 Query 185 ACTATCCTACCATCGAAAGTTGATAGGGCAGAAA 218 |||||||||||| |||| |||||||||||||| Sbjct 19802 CATATCCTACCATCCAAAGCTGATAGGGCAGAAA 19769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510316308736