Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20lateralis_20[genbank_20GCA_5F000333055.2_202015-10- 27] 5,541 sequences; 46,077,030 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq369 264 9e-66 seq391 223 3e-53 >seq369 Length=26862 Score = 264 bits (292), Expect = 9e-66 Identities = 875/1343 (65%), Gaps = 41/1343 (3%) Strand=Plus/Plus Query 65434 GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTC 65493 |||||| || | ||| || || ||| || ||||| ||||| || || | ||| || Sbjct 4638 GAACTCACCAGCCAGCACGCGGCGGTTGTACATGTTCGACGTATACGGCTCGATGGACTC 4697 Query 65494 AGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTT 65553 ||||||| | ||| || || || || ||||| ||||| ||||| || | | ||||| Sbjct 4698 GTTGTTGCCCAAAATCTGAGCCGTCGACGCAGTGGGCATCGGAGCCACGAGGAGCGAGTT 4757 Query 65554 TCGCAATCCGTTCATTTCAATGTTGT----GA-CGCAATTC-GTCCCAGTTCCACATCGG 65607 || | |||| | | | ||| | || |||| | | |||||| || | ||| Sbjct 4758 GCGTATGCCGTGCTTGATCACGTTCTCCTTGAGCGCAGTCCAGTCCCA----CAAACCGG 4813 Query 65608 TTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGA 65667 | || || ||| |||||| || || | | | || | ||||| || || Sbjct 4814 AAGA----CGGGGTC-ACGCCCCACATGTCGAACTGGAAGATACCCTTGCTGGCAGGCGA 4868 Query 65668 ACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACAGCTG-GTCTCGAGTG 65726 || |||| | |||||| ||| ||||||||| | | || | ||||| | | Sbjct 4869 GCCCTGGAACGTCTCGTACGGGCCCAGCTCCTTGGCGATCTC-CATCGACGTCTCCATAG 4927 Query 65727 CGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGT 65786 || | || || |||||||| ||| || |||||||| || | ||||||| Sbjct 4928 AAGCGTAGTAGATCGTCTCGAAGATGTTCATGTTGAGTTCACGGGCTTGCGGGCTCTCGA 4987 Query 65787 ACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGA 65845 ||| |||| ||| |||| ||| | || || ||||| || || |||||||| | || Sbjct 4988 ACG-CATAGTTCATGAGGATAAATGCATCCGCGAGACCCTGGACACCAATACCAACCGGG 5046 Query 65846 CGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATG 65905 || || |||| ||||| | ||||| || |||||||| |||| ||| || | Sbjct 5047 CGGTGGCGCATGTTGGACTTGCGTGCCTCCTCGACGGGGTAGTAGTTGACATCAATGACC 5106 Query 65906 CGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAATCAAAATGT 65965 |||||| || || |||||||| | | || ||| | ||| || Sbjct 5107 TTATTCAAGTTCCGGGTCACCACCTTG--GTCACCTCGTACAGCTTC----------TGG 5154 Query 65966 TTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTG 66025 | | || | | | || | ||||||||||||| ||||| | ||| || |||||| Sbjct 5155 TA--GTTGAAC---ACT-CCATCCTCCACAAACTTGGGGAGGGCCACAGACGCCAGGTTG 5208 Query 66026 CAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAG 66085 || || || | ||| || || | || ||||| | ||| ||| ||||| || || || Sbjct 5209 CACACCGCCACCTCATCGGGCGACGTGTACTCCATAATCTCGCAGCACAAGTTGCTTGAG 5268 Query 66086 CGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATG 66145 || || ||||| | ||||| || || |||||| ||| || |||||||||| |||| Sbjct 5269 CGGATCGTGCCGAGGTTCTGCTGGTTCGACTTGCGGTTGGCCGCGTCCTTGTACAGCATG 5328 Query 66146 TACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTC 66205 |||| ||| ||||||| || | || | ||||||| ||| || | || || Sbjct 5329 AACGGCACGCCTGTCTCAATCTGCGCGTCCAGGATGGCGAACCACAGCTGCTGGGCGTTG 5388 Query 66206 ACCGTACGTAC-CGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTC 66264 | ||| | | | ||| | || | ||||| | ||||| || ||||| || Sbjct 5389 ATCGT-CTTGCGCGCGCGTCCCTCCTTCTCGTACTTCTCGTACAGCGTCTCGAACTCGTC 5447 Query 66265 ACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATC 66324 ||||| ||| | || | || || || || || | ||| ||| | |||| Sbjct 5448 GCCCCAGCACTCGTAGAGTCCGGGGGCCTCGTTGGGGCAGAACAGGCTCCACTTGCCATT 5507 Query 66325 CTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGC 66384 | || || || ||| || ||||| || | ||| || ||||| || | ||||| || Sbjct 5508 CGCCTCCACGCGCTTCATGAACAGATCGGGGACCCACAGAGCGTAAAACAAGTCGCGCGC 5567 Query 66385 TCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATG 66444 || ||| ||| | |||||||| || |||| || |||||||| || | |||||| || Sbjct 5568 GCGGTGCAGCTCGTTACCGTGATTCTTACGCAGCTCCAGGAACTCGAACACGTCGGCGTG 5627 Query 66445 CCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTA 66504 ||| || |||||||||||||||||||| || | || ||||| || || ||||| || || Sbjct 5628 CCACGGCTCCAGGTAGATGGCGAACGATCCTTTGCGCTTGCCTCCGCCCTGGTCCACATA 5687 Query 66505 GCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGT 66564 |||||| | ||||||||| | || ||| || | || |||||| ||| || || || Sbjct 5688 GCGAGCCGTGTCGTTGAAGACCCTCAGCATGGGGATGATCCCGTTGGATGATCCGTTCGT 5747 Query 66565 GCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATTCAGACCAATACCACCGG 66623 |||| ||| | | | |||| || || || | ||| | | | | |||||||| |||| Sbjct 5748 GCCGCGGAT-GTAGCTGTTCGTGGCGCGGATGTTGTGCATACTAATGCCAATACCTCCGG 5806 Query 66624 CCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCAC 66683 || ||| |||||| || || | | || | | ||||| ||||| ||||| Sbjct 5807 CCCACTTGGAGATGCACGCGCACTGCTTGAGCGTGTCGTAAATGCCCTCAATCGAGTCGT 5866 Query 66684 CCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGA 66743 ||| |||| ||| ||| |||| || || || || || ||| |||| |||| Sbjct 5867 CCTGCATGGCCAGCAGGAAGCACGACGACAGCTGCGGACGCGGCGTGCCGGCGTTAAAGA 5926 Query 66744 GGGTGGGTGTAGCGTGCGTAAAG 66766 | ||||| || |||||||||||| Sbjct 5927 GCGTGGGCGTCGCGTGCGTAAAG 5949 >seq391 Length=25901 Score = 223 bits (246), Expect = 3e-53 Identities = 588/886 (66%), Gaps = 25/886 (3%) Strand=Plus/Minus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| ||||||| ||| || | | || | |||| |||||||| |||||||| Sbjct 1304 CGGTTCGTGCTGTTCCCGATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAGGCGGAG 1245 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGT 61173 || || |||||||||| |||||| | || || | ||| |||| ||||||| | Sbjct 1244 GCGTCGTTCTGGACGGCCGAGGAGCTGGACCTGGTGCACGACCTGAAGGACTGGGGGAAC 1185 Query 61174 TT-ATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGA 61232 | | ||| | || | || ||||| || || ||| |||||||||| || || || Sbjct 1184 CTGACCGA-CAACGAGCGTCACTTCATCAAGCACGTGCTGGCGTTCTTCGCTGCCAGCGA 1126 Query 61233 CGGTATCGTCAATGAGAATTTATTG--GAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAG 61290 ||| ||||| || ||||| | | |||| ||| | |||||||| ||| ||||| Sbjct 1125 CGGCATCGTGAACGAGAACCTGGCGATGAAC--TTCAGCAATGAGGTGCAGGTGCCGGAG 1068 Query 61291 GCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGT 61350 || || || ||||||||||||||||| || || ||||| ||||||||||| ||||| Sbjct 1067 GCTCGCTGCTTCTACGGCTTCCAGATCGCTATCGAGAACATCCACTCGGAGGTGTACTCG 1008 Query 61351 GTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGAT----TGTTCAATGC 61406 | || ||||| || ||||||| ||| | ||| ||| ||| || | ||| Sbjct 1007 CTGCTGATCGACACATACATCAAGGACGCCGTGGA----GAAGGATCACCTGCTGCGTGC 952 Query 61407 CATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG-ATCACCA 61465 |||||||||||| ||| ||| || ||| || ||||| |||| ||| | ||| Sbjct 951 CATCGAGACGATCCCGTGCGTGGAGAAGAAGGCCCGCTGGGCGCTCAAGTGGTGTGACC- 893 Query 61466 GTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTT 61525 | | | | | || || ||||||| || || | || ||||| | || | Sbjct 892 CTCGCGTGTCGTCCTACCCGGAGCGCCTGCTGGCGTTCGCTGCCGTGGAGGGCATTTTCT 833 Query 61526 TCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585 || || || || | | ||||| ||| | || || || || || ||||| ||||||| Sbjct 832 TCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAAAAGCGCGGCCTCATGCCTGGTCTGA 773 Query 61586 CCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC-TG--TTT 61642 |||| || ||| | || || |||||||||||||| || || || || | Sbjct 772 GCTTCTCGAACGAGCTCATCAGCCGGGACGAGGGCATGCACACGGACTTCGCGTGCCTCA 713 Query 61643 TGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTC 61702 || || || | | ||||||| | | ||||| || ||| | ||| || | Sbjct 712 TG-TACTCGA-----AGTTGGTGAACAAGCTGCCGGAGAGCCGCGTGCACGCGATCGTGC 659 Query 61703 GTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCG 61762 |||| || || || || || || || ||| ||| | | ||||| || |||| Sbjct 658 GTGACGCTGTGGTGATTGAGCACGAGTTCGTGAGTGATTCCCTCCCCGTGGAGCTGATCG 599 Query 61763 GCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG 61822 ||||||| | || || |||| || || || || || || |||||||| |||||| | Sbjct 598 GCATGAACTCTGCGCTCATGTGCCAATACATCGAGTTCGTGGCCGACCGCCTGTTGTACT 539 Query 61823 ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTT 61882 ||||| | |||||| || ||| ||||| || || | ||||||||||| | Sbjct 538 CGCTGGGTGCGTCCAAGATCTACAACGTGAAGAACCCGTTCGACTGGATGGACATGATCT 479 Query 61883 CGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 |||| | |||||||| || || || ||||| || || ||||| || Sbjct 478 CGCTACAGGGCAAGACCAACTTCTTTGAGAAGCGCGTGGGCGAGTA 433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397541151860240