Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq965 107 5e-21 >seq965 Length=15598 Score = 107 bits (118), Expect = 5e-21 Identities = 234/344 (68%), Gaps = 16/344 (5%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGT 60 ||| | || || ||| |||||||| ||| ||||||||||||||||||||||| || Sbjct 1677 TACTTAAAAAAGAAGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGA 1619 Query 61 GCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGAC--AG 118 || ||| ||| ||||||| | | ||||||||| || | ||| |||| | |||| | Sbjct 1618 GCGAGCATTATTCGGAATGATTAGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAGTTGAAA 1559 Query 119 GTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTG----ACTGCACGACTAGAGT 174 | |||| | || ||| | | ||||| | |||| ||| |||| Sbjct 1558 GAAACAAATTAAAG--CTCAACTTTATA----CATTTTTTCAAAACTGATAAACTGGAGT 1505 Query 175 GTGTC-AGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAA 233 | ||||| ||||||| | || || | |||| ||| |||| | ||||| Sbjct 1504 ATAAATAGAGGATAATGGAATTTCTATTGGAGTGATAAAATACGTTGATAATAGAAGGAA 1445 Query 234 CACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGG 293 ||| |||||||||||| ||||| | |||||| || | |||||||| |||| Sbjct 1444 GACCTATGGCGAAGGCAATTATCTGGGTATATACTGACACTGAGAAACGAAAGCTTGGGT 1385 Query 294 AGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||| ||| |||||||| |||| ||||||||| || |||||||| Sbjct 1384 AGCGAACGGGATTAGAGACCCCGGTAGTCCATGCTGTAAACGAT 1341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289289993056