Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2463 381 1e-103 seq8475 179 6e-43 SEQ20684 80.6 5e-13 >seq2463 Length=8979 Score = 381 bits (422), Expect = 1e-103 Identities = 243/264 (92%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 8861 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 8802 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| || ||| |||| ||||| ||||||||||||||||| Sbjct 8801 TTAGTGGGTGAACAATCCAACAATTGGCGAGTTCTACTTCGCAATGATAGGAAGAGCCGA 8742 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 8741 CATCGAAGAATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCC 8682 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||||||| | ||||| | | ||||||||||||||||| Sbjct 8681 CTGTGGTAACTTTTCTGACACCTCTAGCTTAAAATTCGAAAGAACTAAAGGATCGATAGG 8622 Query 271 CCACACTTTCATGGTTTGTATTCA 294 |||| |||||| |||||||||||| Sbjct 8621 CCACGCTTTCACGGTTTGTATTCA 8598 >seq8475 Length=3175 Score = 179 bits (198), Expect = 6e-43 Identities = 116/127 (91%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 ||| |||| ||||| ||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1698 CGAGTTCTACTTCGCAATGATAGGAAGAGCCGACATCGAAGAATCAAAAAGCAACGTCGC 1639 Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 |||| ||||||||||||||| |||||||||||||||||||||||||||||| ||| |||| Sbjct 1638 TATGGACGCTTGGCTGCCACTAGCCAGTTATCCCTGTGGTAACTTTTCTGGTACCACTAG 1579 Query 238 CCTCAAA 244 | | ||| Sbjct 1578 CTTAAAA 1572 >SEQ20684 Length=1223 Score = 80.6 bits (88), Expect = 5e-13 Identities = 46/47 (98%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT 217 ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 ACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGT 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854194610784