Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq965 82.4 2e-13 >seq965 Length=15598 Score = 82.4 bits (90), Expect = 2e-13 Identities = 245/360 (68%), Gaps = 25/360 (7%) Strand=Plus/Plus Query 46 GTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCC 105 ||||| |||| || |||| ||||| | |||||| ||| ||| || |||||| | | Sbjct 6921 GTTCGATCCTTCAAATAGTT-TTACCTATT-TTTCAATCTGTTCAT-GGTTAGATCACTC 6977 Query 106 GGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGC 165 |||| ||||||| || | |||| | | | ||| ||| | ||| |||||| Sbjct 6978 AGTTT-CGGGTCTTATTTATATA-ACTATAAAGCTTTTTAAAACTTGATTTAT-CTACGC 7034 Query 166 CTCCCCTATTCGGTTAAGCTTTGCCACTGAAAATAAG-TCGCTGACCCATTATACAAAAG 224 || | |||| |||||||| || | | ||||||| | |||| |||||||| |||||| Sbjct 7035 CTACTTTATTAAATTAAGCTT-GCTA-TAAAAATAAACTTGCTGGCCCATTATGCAAAAG 7092 Query 225 GTACGCAGTCACCC---AACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGA 281 |||| | || || || ||||| ||| | || || | ||| ||||||| | Sbjct 7093 GTACACTGTTACTTTTTAAAAAAGT----TCCAATTGATTATTAACATTAAGTTTCAGAA 7148 Query 282 TCTATTTCACTCCCCTCTCCGGGGTTCTTTT-CGCCTTTCCCTCACGGTACTAGTTCACT 340 | ||||||| | || |||||||| | ||||||| | || ||||| ||||||| Sbjct 7149 T-TATTTCAAAC-----TCAAAAGTTCTTTTTCACCTTTCCTTTACAGTACTTGTTCACT 7202 Query 341 ATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTT 400 |||| ||| | | | || || || |||| |||| |||| ||||||| | |||| || Sbjct 7203 ATCGATCATTAATTTTTA-AAAGGTTTTGAGGGTGGTTCCCCAATATTCA-AAAAAGATT 7260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241301531776