Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2593 486 6e-135 seq1419 123 8e-26 SEQ10311 104 7e-20 seq8960 89.7 2e-15 >seq2593 Length=8663 Score = 486 bits (538), Expect = 6e-135 Identities = 424/516 (82%), Gaps = 22/516 (4%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 || |||||||||||| | ||| | || ||||| | || ||||||||||||||||| Sbjct 1071 GTTCTCATTCCAATTGCCCGACTCGAA-GAGCCAGAGCATTGTTATTTATTGTCACTACC 1129 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||| || || |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1130 TCCT-GTATCAGGATTGGGTAATTTACGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 1188 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||| ||||||||||||||||||| |||||||||||||||||||||||| || ||||||| Sbjct 1189 TTCTAAGGCTCCCTCTCCGGAATCAAACCCTAATTCCCCGTTACCCGTTAATGCCATGGT 1248 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 ||||| |||||||||||| |||| |||||||||||||| | | || ||| || Sbjct 1249 AGGCCCATATCCTACCATCCAAAGCTGATAGGGCAGAAACTCAATCGATTTATC----GC 1304 Query 240 TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA-AGGAGC--CCCGAAG--GGC 294 ||| || ||||| || ||||||||||| ||| || | | | ||||||| || Sbjct 1305 GCAAAGC---GCGATCCGCACAGTTATTATGACTCAACACAATACCAGCCCGAAGACTGC 1361 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCCGA-----AGTCGGGGTTTTTAGCATGT 349 |||| ||| ||||||||||| | ||| |||| ||| ||| ||| |||||| Sbjct 1362 ATTGG-TTTCAATCTAATAAATGCTACCCGCCCGACAAGCAGTTGGGTATTTATGCATGT 1420 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAAC 409 ||||||||||||||||| ||||||||||| |||||||||||||||| | || || ||||| Sbjct 1421 ATTAGCTCTAGAATTACTACGGTTATCCAAGTAGTAAGGTACTATCGAGTAGACTATAAC 1480 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATG 468 |||| ||||||||||||||||||||||| ||| | | || ||||||||||||||||||| Sbjct 1481 TGATATAATGAGCCATTCGCAGTTTCACAGTACAAAAGTGTTTATACTTAGACATGCATG 1540 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||| ||||||||||||||| Sbjct 1541 GCTTAATCTTTGAGACAAGCGTATGACTACTGGCAG 1576 >seq1419 Length=12695 Score = 123 bits (136), Expect = 8e-26 Identities = 91/106 (86%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 113 TAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATA 172 ||||||||||| || |||||||||||||||| ||||||||||| ||||| |||| || Sbjct 4306 TAGCCGTTTCTAAGACTCCCTCTCCGGAATCAGTCCCTAATTCCCTGTTACTCGTTAATG 4365 Query 173 CCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAA 218 |||||||||||| |||||||||||| |||| | |||||||| ||| Sbjct 4366 CCATGGTAGGCCCATATCCTACCATCCAAAGCTAATAGGGCAAAAA 4411 >SEQ10311 Length=2613 Score = 104 bits (114), Expect = 7e-20 Identities = 73/82 (89%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 424 ATTCGCAGTTTCACTGTATAGAT-TGCTTATACTTAGACATGCATGGCTTAATCTTTGAG 482 |||||||||||||| ||| | | || ||||||||||||||||||||||||||||||||| Sbjct 1107 ATTCGCAGTTTCACAGTACAAAAGTGTTTATACTTAGACATGCATGGCTTAATCTTTGAG 1166 Query 483 ACAAGCATATGACTACTGGCAG 504 |||| | |||| |||||||||| Sbjct 1167 ACAATCGTATGCCTACTGGCAG 1188 >seq8960 Length=2994 Score = 89.7 bits (98), Expect = 2e-15 Identities = 82/101 (81%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCT-GTATCAGTATTTATTGTCACTACC 59 || |||||||||||| | ||| | || ||||| | || ||||||||||||||||| Sbjct 142 GTTCTCATTCCAATTGCCCGACTCGAA-GAGCCAGAGCATTGTTATTTATTGTCACTACC 84 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTT 100 |||| || || |||||||||||||| ||| ||||||||||| Sbjct 83 TCCCTGTATCAGGATTGGGTAATTTACGCTCCTGCTGCCTT 43 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510036914944