Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20megakarya_20[genbank_20GCA_5F002215365.1_202017-07- 06] 24,039 sequences; 101,504,516 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 203 3e-47 seq2671 201 9e-47 seq7045 145 6e-30 >seq1 Length=128069 Score = 203 bits (224), Expect = 3e-47 Identities = 586/888 (66%), Gaps = 29/888 (3%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 || ||||| | ||||||||| || | | || | |||| |||||||| ||||| || Sbjct 110910 CGCTTCGTGCTCTTCCCCATCCAGGAGCACGACGTGTGGCAAATGTACAAGAAGGCCGAG 110969 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTT-GTCCAAAGACATGAATGACTGGGAGCG 61172 || ||||||||||||| || ||| ||||| | || || ||| | || ||||||| || Sbjct 110970 GCATCCTTCTGGACGGCCGAAGAGCTCGATCTAGTGCAC-GACCTCAAGGACTGGG-GCA 111027 Query 61173 TTTATCGAGCGGTGAACAA----CATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTT 61228 | | ||| ||| | || ||||| || || ||| | || |||||||| || Sbjct 111028 ---ACCTCACGGATAACGAGCGCCACTTCATCAAGCACGTGCTCGCCTTCTTTGCGGCCA 111084 Query 61229 CGGACGGTATCGTCAATGAGAATTT---ATTGGAACGTTTCGCGCAGGAGGTGCAAGTGT 61285 ||||| |||||||| ||||| || | || ||| ||| | || ||||| || Sbjct 111085 GCGACGGCATCGTCAACGAGAACTTGGCAATG-AAC--TTCAGCAACGAAGTGCAGGTAC 111141 Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345 | |||||||| || ||||| ||||||||||| ||||| ||||| ||||||| ||| | | Sbjct 111142 CAGAGGCGCGGTGCTTCTATGGCTTCCAGATCGCCATTGAGAACATCCACTCCGAGGTCT 111201 Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGATTGTTCAATG 61405 || | || || || |||||||||| ||| || ||| || | || | || Sbjct 111202 ACTCGCTGCTTATTGACACGTACATCAAGGACGCGGTGGAGAAGGACCACCTGCTGCGTG 111261 Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCA 61465 | || || || || || || ||| |||||| | ||||| || ||| | | Sbjct 111262 CTATTGACACCATCCCATGTGTCAAGAAGAAAGCACACTGGGCTCTCCGATGGTGCGACC 111321 Query 61466 GTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTT 61525 | | | | | | || || |||| || || |||| ||| || || | || | Sbjct 111322 CTCGTGTGTCCTCGTATCCGGAGCGTCTGCTCGCCTTCGCGGCGGTGGAAGGCATCTTCT 111381 Query 61526 TCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGA 61585 || || || || | | ||||| ||| | ||||| || || || ||||| ||||| | Sbjct 111382 TCTCGGGCTCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCGGGTCTCA 111441 Query 61586 CCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTG-CTG--TTT 61642 ||| || ||| | || || |||||||||||||| || |||| ||| | Sbjct 111442 GTTTCTCGAACGAGCTCATTAGCCGTGACGAGGGCATGCACACGGACTTTGCCTGCCTCA 111501 Query 61643 TGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTC 61702 || || || | | || ||||| | | ||||| || ||| ||||| || | Sbjct 111502 TG-TACTCGA-----AGCTCGTGAACAAGCTGCCGGAGAGCCGCGTGCACGAGATCGTGC 111555 Query 61703 GTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCG 61762 |||| || || ||||| || || ||| || || | |||| || ||||||| Sbjct 111556 GTGATGCTGTGGTGATCGAGCATGAGTTTGTGCGCGATTCGCTGCCGGTGGAGCTCATCG 111615 Query 61763 GCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCT--GTTGGT 61820 | ||||| | || || |||| ||||| ||||| || || || ||||| || | | Sbjct 111616 GTATGAACTCGGGCCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGCCTTCTCTACT 111675 Query 61821 CGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGAT 61880 || | | || | | |||||| || |||| ||||| || || | ||||||||||| Sbjct 111676 CGCTGGGAGTTTCCA--AGATCTACAACGCGAAGAACCCTTTCGACTGGATGGACATGAT 111733 Query 61881 TTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 |||||| | |||||||| || || |||||||| ||||| ||||| || Sbjct 111734 CTCGCTGCAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGGGCGAGTA 111781 >seq2671 Length=8519 Score = 201 bits (222), Expect = 9e-47 Identities = 395/582 (68%), Gaps = 8/582 (1%) Strand=Plus/Minus Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 |||| |||||||| ||||||| ||| || | |||||| || || | || || |||| | Sbjct 5836 CCACGAACTTGGGCAGGGCAACAGACGCCAAGTTGCACACCGCCACTTCATCTGGAGACG 5777 Query 66051 TATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGAT 66110 | ||||| | | ||| ||||| || ||| |||| || ||||||| |||||| || | Sbjct 5776 TGTACTCCATCACCTCGCAGCACAAGTTGCTGGAGCGAATCGTGCCCAGATTCTGCTGGT 5717 Query 66111 TACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGG 66170 | |||||| ||| || || ||||| | |||| |||| || || |||| || | Sbjct 5716 TCGACTTGCGGTTGGCCGCGTCTTTGTAAAGCATGAACGGCACTCCTGTTTCAATCTGAG 5657 Query 66171 ACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTA---CGTAC-CGCCCTACCT 66226 || | |||||| ||| || | || || | || ||| | || || ||| Sbjct 5656 CGTCCAAGATGGCAAACCACAGTTGCTGCGCATTGATGGTTTTGCGTGCACGTCCCTCCT 5597 Query 66227 TTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACAT 66286 || ||||| ||||||||||| ||| || || ||||| ||| | |||| Sbjct 5596 TT----TCGTACTGTTCGTAGAGCGTTTCAAACTCGTCTCCCCAGCACTCGTAAAGACCC 5541 Query 66287 GGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAAT 66346 ||| | | || || | || ||| | |||| || || | ||| || Sbjct 5540 GGAGCTTCATTGGGGCAGAACAAACTCCACTTGCCATTGGCCTCCACCCTCTTCATGAAC 5481 Query 66347 AGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGA 66406 |||||||| | ||| || || ||||| | ||||| ||||| ||| ||| ||||||| Sbjct 5480 AGATCAGGGACCCATAGCGCATAGAACAAGTCGCGCGCTCGATGCAACTCGTTGCCGTGG 5421 Query 66407 TTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCG 66466 || ||||||| ||| |||||||| || | ||| || ||||| ||||||| || | ||| Sbjct 5420 TTCTTGCGCAGGTCCAGGAACTCGAACACGTCTGCGTGCCACGGTTCCAAATACACAGCG 5361 Query 66467 AACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACA 66526 |||||||| | |||||||| || || ||||| |||||||| || | |||||| || Sbjct 5360 AACGAGCCTTTGCGTTTGCCTCCGCCCTGGTCCACGTAGCGCGCCGTGTCGTTGAATACG 5301 Query 66527 CGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCG 66568 |||| ||| || | || ||||| || ||| ||||||||| Sbjct 5300 CGCAGCATGGGGATGATGCCGTTGGACGAGCCGTTGGTGCCG 5259 >seq7045 Length=3816 Score = 145 bits (160), Expect = 6e-30 Identities = 400/596 (67%), Gaps = 24/596 (4%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTAC 61101 |||||||| ||| ||||| | ||||| || | | | ||| | |||| |||||| Sbjct 3352 GAGAATCCCAATCGATTCGTGCTCTTCCCGATTCAAGAACACGATGTGTGGCAGATGTAC 3293 Query 61102 AAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGAT-TTGTCCAAAGACATGAA 61160 || || ||||||||||| |||||||| | ||||| ||||| | || | | ||| | || Sbjct 3292 AAGAAAGCGGAAGCTTCGTTCTGGACAGCCGAGGAACTCGATCTCGTGC-ACGACCTCAA 3234 Query 61161 TGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTT 61220 || |||||| | || ||| | || ||||| ||||| ||| | || || || Sbjct 3233 AGATTGGGAGAAACTCACGGATAATGAGCGCCACTTCATCAAACACGTGCTCGCATTTTT 3174 Query 61221 TGCCGCTTCGGACGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGG 61276 || || || || ||||||||||| ||| | || |||| ||| | || | Sbjct 3173 CGCTGCCAGTGATGGGATCGTCAATGAAAATCTGGCCAT--GAAC--TTCAGCAACGAAG 3118 Query 61277 TGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACT 61336 |||| ||| | || || || || |||||||| |||||||| ||||| ||||| |||||| Sbjct 3117 TGCAGGTGCCTGAAGCTCGATGCTTCTACGGTTTCCAGATCGCCATTGAGAACATCCACT 3058 Query 61337 CGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACGAT 61396 | || | ||| | ||||| || ||||| |||| ||| | || | ||| || Sbjct 3057 CCGAAGTCTACTCACTGCTCATTGACACGTATATCAAGGATACTGTGG-AGAAAAACTAT 2999 Query 61397 -TGTTCAATGCCATCGAGACGA-TACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 || | |||||||||||| | | || ||| | || ||||||| | ||||| || || Sbjct 2998 CTGCTGCGTGCCATCGAGACAATTCCCTGCGTTCAA-AAGAAAGCGAACTGGGCATTGAA 2940 Query 61455 TTGGATC-ACC--AGTACAACG-GCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGG 61510 ||| | ||| || || |||| || ||||||||||| ||||| | Sbjct 2939 ATGGTGCGACCCGCGTGTGTCGTCCTAC----CCGGAGCGATTGCTGGCGTTTGCTTCAG 2884 Query 61511 TCGAGGGTGTATTTTTCAGTGGATCGTT-TGCCGCAATCTTTTGGTTGAAGAAACGTGGA 61569 | || ||| | || || || ||||| ||| || || || ||| | ||||| || || Sbjct 2883 TGGAAGGTATCTTCTTTTCGGGGTCGTTCTGCAGC-ATTTTCTGGCTCAAGAAGCGAGGC 2825 Query 61570 CTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCA 61625 || ||||| ||||| | |||| |||||| |||| || ||||| || ||||| Sbjct 2824 CTCATGCCTGGTCTCAGCTTCTCGAATGAGATGATCAGTCGTGACGAAGGTATGCA 2769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397451522390960