Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq855 248 4e-63 seq170 102 3e-19 >seq855 Length=10313 Score = 248 bits (274), Expect = 4e-63 Identities = 242/316 (77%), Gaps = 38/316 (12%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| |||||||||||||||||||||||| | ||| |||||| |||||| | Sbjct 3243 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTGTTAGGGTGTGGA 3184 Query 464 AACCCGTGCGCGTAATGAAAGTGAACGG----------------AGGTGGGAACCCGTGA 507 ||||| ||||| |||||||||||| || |||| |||| | || Sbjct 3183 AACCCCAGCGCGAAATGAAAGTGAAGGGCAGCGCAAGTTGTCTGAGGTAGGAAACGTTGC 3124 Query 508 GGGT----------------GCACCATCGACCGATCCTGATGTCTTCG----GATGGATT 547 ||| |||| ||||||||||| ||| ||||| || |||| Sbjct 3123 GGGCCTCGGTCTGCGGCGTGGCACTATCGACCGATCATGAAC-CTTCGTGGTGAAAGATT 3065 Query 548 TGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAA 607 ||||| ||||| | |||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 3064 TGAGTTTGAGCACATATGTTGGTACCCGAAAGATGGTGAACTATGCCTGAGTAGGGTGAA 3005 Query 608 GCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 ||||| ||||||||||||||| ||||| |||| ||||| |||||||||||||||||||| Sbjct 3004 GCCAGGGGAAACTCTGGTGGAAGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAAC 2945 Query 668 TTGGGTATAGGGGCGA 683 |||||||||||||||| Sbjct 2944 TTGGGTATAGGGGCGA 2929 Score = 181 bits (200), Expect = 4e-43 Identities = 136/160 (85%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||||||||||||| | || | || |||||||| | ||||||||||||| Sbjct 3791 GAGTCGCGTTGTTTGGGAATGCAGCGCAAAGTAGGTGGTAAATTCCATCTAAAGCTAAAT 3732 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| ||||||||||||| ||||||| |||| ||||||||||||| |||||| || Sbjct 3731 ATTGGTGCGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACTTTGAAA 3672 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||| || || ||||| || |||||||||| || Sbjct 3671 AGAGAGTTAAAGAGTACCTGAAACTGCTGAAAGGGAACCG 3632 >seq170 Length=55551 Score = 102 bits (112), Expect = 3e-19 Identities = 76/88 (86%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGT-CA 463 || ||||||||| |||||||||||||||||||||||| | ||| |||||| |||||| | Sbjct 55013 CGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTGTGCAAGTGTTAGGGTGTGGA 54954 Query 464 AACCCGTGCGCGTAATGAAAGTGAACGG 491 ||||| ||||| |||||||||||| || Sbjct 54953 AACCCCAGCGCGAAATGAAAGTGAAGGG 54926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079940755100