Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314345.1_202015-10- 14] 2,762 sequences; 40,062,232 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq439 237 1e-57 seq12 219 3e-52 seq55 188 6e-43 >seq439 Length=25118 Score = 237 bits (262), Expect = 1e-57 Identities = 1067/1662 (64%), Gaps = 59/1662 (4%) Strand=Plus/Plus Query 65123 TAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTT 65182 ||||||||||| |||||||| || ||| || ||||| ||||| || | | | || Sbjct 17480 TAGTACATGCCCGTCTTGAGCCCCTTCTTCCAGGCGTAGAAGTGCATGGACG-TGAGCTT 17538 Query 65183 GCATAAT--TCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGAC 65240 || |||| |||| ||||| | || || || | |||||||||||| ||||| | Sbjct 17539 GC-TAATCGTCGGGTCGGCGATGTGGATGTTGAGCGACTGACTCTGGCAAATGTAGGCGC 17597 Query 65241 CACGATCTGCAGCCATGTCAATGATACGACGTCCCGAT-ATCTCCCAGACGGTCTTGTAC 65299 |||| || |||| || ||| | | | | | || | |||||||| || ||||||||| Sbjct 17598 CACGGTCGGCAGACAGGTCCAGCACA-GCCTTCTGCTTGATCTCCCACACCGTCTTGTAC 17656 Query 65300 AGGCGACGT-ACCTCAATTGGAATCTCCTCAATGTCCTGGACTGAACCAC-GACGTGCAA 65357 | | | || | || || ||| | || ||| || || || | | ||| || Sbjct 17657 TT-CTCCTTGACGTGGTCCGGGATTACCTTCACGTTCTGCACGGAGCCGCCGTCGTTCAG 17715 Query 65358 TAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGT 65417 | | | || |||| | | | ||| | ||||| |||||| || | | | || || Sbjct 17716 GA-TCTGGTTGCGCACCTCCGGCGTCCAGATACCCAGATCGATCAGCTCGTTCATCAGGT 17774 Query 65418 GACGATTGATGAC--TTG-GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACG 65474 || ||| | || | | ||||||||| | || ||||||||| || |||||||||| Sbjct 17775 -AC--TTGTTCACGATCGTGAACTCGCCTGCAAGCACACGACGGTTGTACATGTTGGACG 17831 Query 65475 TGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGG 65534 || || || | || || ||||||| || || || |||||||| || || ||||||| Sbjct 17832 TGTACGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCAGTAGAAGCCGTCGGCATGG 17891 Query 65535 GAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGT----GACGCAATTCG 65590 |||| |||| || ||||| || | |||| | | | ||| | || | | Sbjct 17892 GAGCCACCAGCAGCGAGTTGCGAAGACCGTGCTTGATCACGTTCTCCTTGAGGGTAG--- 17948 Query 65591 TCCCAGTTCCACATCGGTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTT 65650 |||||| ||||| || | | | || ||| |||||| || || | | Sbjct 17949 -CCCAGTCCCACA--GGCCAGAAGAAGGCGTC-ACGCCCCACATGTCGAACTGGAAGACA 18004 Query 65651 CCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGA 65710 || | || || || || || |||| | || || ||| |||||| |||| | Sbjct 18005 CCCTTGCTAGCTGGCGAGCCCTGGAACGTCTCATAGGGCCCCAACTCCTTCGCAATCTC- 18063 Query 65711 CAGCTG-GTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACG 65769 || | ||||| | | | | || ||||||||||| ||| || ||||| | Sbjct 18064 CATCGACGTCTCCATGGAACCGTAGTAGATGGTCTCGAAGATGTTCTTGTTGAGTTCGCT 18123 Query 65770 TGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAA 65828 |||| | ||||||| |||| ||| |||||| | || | ||| |||||||| |||| Sbjct 18124 GGCCTGCTGGCTCTCGAACGG-ATAGTTCATCAGAATGAACGCGTCAGCCAGACCCTGAA 18182 Query 65829 CTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGT 65888 | || ||||||| ||| || || |||| ||||| | ||||| || ||||||| Sbjct 18183 CACCGATACCGACGGGGCGGTGGCGCATGTTGGACTTGCGAGCCTCCACCACGGGGTAGT 18242 Query 65889 AATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATT 65948 | |||| ||||| | |||| ||| || |||||||| | || | | ||| | Sbjct 18243 AGTTGACGTCGATGACCTTGTTCAGATTACGCGTCACCACCTTGACCA--CCTCGTACAG 18300 Query 65949 GTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGG 66008 ||| || | | | | || | |||| |||||||| || | Sbjct 18301 CTTCT---------------GGTAGCTGAAAACTCCCTC-CTCCACGAACTTGGGGAGCG 18344 Query 66009 CAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGG 66068 | | ||| || | ||||| ||||| | || || |||| || ||||| | | || Sbjct 18345 CGACAGAGGCCAAATTGCACACAGCCACTTCATCGGGAGACGTGTACTCCATCACCTCAC 18404 Query 66069 TGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATG 66128 ||||| |||||| | || || || |||| ||||| || || ||||| || || Sbjct 18405 AGCACAAGTTACTGGAACGGATCGTACCCAGGTTCTGCTGGTTGGATTTGCGGTTAGCTG 18464 Query 66129 CATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCC 66188 | |||||||| | |||| | || || || |||| |||| |||| ||| ||| || Sbjct 18465 CGTCCTTGTAGAGCATGAAAGGCACACCCGTTTCAATCTGGGCGTCAAGGATCGCGAACC 18524 Query 66189 AAAGAGCGCGTGCCTTCACCGTA---CGTAC-CGCCCTACCTTTGCGTTCGTAATGTTCG 66244 | || | || || | || || | |||||| |||| ||||| | ||| Sbjct 18525 ACAGCTGCTGGGCGTTGATGGTCTTGCGAGCACGCCCTTCCTTC----TCGTACTTCTCG 18580 Query 66245 TAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACAC 66304 |||||| || || ||||||||| ||| | || | ||| | | ||||| Sbjct 18581 TAGAGGGTCTCAAACTCTTCACCCCAGCACTCGTAGAGTCCAGGAGCTTCATTAGGACAG 18640 Query 66305 ATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGG 66364 | || ||| | |||| || || | ||| || ||||| || | ||| | Sbjct 18641 AACAAACTCCACTTGCCATTGGCCTCCACCCTTTTCATGAAGAGATCGGGCACCCACAAT 18700 Query 66365 GCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGG 66424 |||||||| | || || || || || ||| | |||||||| ||||| | || ||| Sbjct 18701 GCGTAGAACAAGTCACGAGCACGGTGGAGCTCGTTACCGTGATTCTTGCGGAGATCCAGG 18760 Query 66425 AACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTG 66484 ||||| || | ||||| ||||| || ||||||||||||||||| |||||| | || ||| Sbjct 18761 AACTCGAACACATCGGCGTGCCACGGCTCCAGGTAGATGGCGAAGGAGCCCTTGCGCTTG 18820 Query 66485 CCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGC 66544 || || || ||||| |||||||||||| || |||||||| | |||||| || | | Sbjct 18821 CCTCCTCCCTGGTCCACGTAGCGAGCGGTATCATTGAAGACTCTCAACATGGGGATAATT 18880 Query 66545 CCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAAC 66603 || || || ||||| |||||| ||| | | | |||| || || |||| ||| | Sbjct 18881 CCATTGGAGGAACCATTCGTGCCGCGGAT-GTAGCTGTTCGTCGCACGGATATTGTGCAT 18939 Query 66604 ATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAA 66663 | | | |||||||| || ||| ||| |||||| ||||| | || || | | Sbjct 18940 ACTAATGCCAATACCTCCAGCCCACTTGGAGATGCAGGCACACTGCTTCAAGGTGTCGTA 18999 Query 66664 TATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTT 66723 ||||| || || |||||| ||| || | || ||| |||| || | ||| ||| Sbjct 19000 GATGCCCTCGATCGAGTCATCCTGCATCGCCAACAGGAAGCAAGAGGACAATTGCGGTCG 19059 Query 66724 GGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAA 66765 ||||| | || ||| || || || |||||||| || || Sbjct 19060 TGGTGTACCAGCATTGAACAGCGTCGGGGTAGCGTGAGTGAA 19101 >seq12 Length=196586 Score = 219 bits (242), Expect = 3e-52 Identities = 605/907 (67%), Gaps = 43/907 (5%) Strand=Plus/Minus Query 61042 GAGAATCCTCGTCGTTTCGTATTGTTCCCCATC---GAGTATGAGGATATTTGGCGCATG 61098 ||||| || | || ||||| | ||||||||| ||| |||||| | |||| ||| Sbjct 58903 GAGAACCCCCACCGCTTCGTGCTCTTCCCCATCCAGGAGCATGAGG---TGTGGCAGATG 58847 Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTT-GTCCAAAGACAT 61157 ||||| |||||||| |||||||||||||||| |||||| | ||| | || || ||| | Sbjct 58846 TACAAGAAGGCGGAGGCTTCCTTCTGGACGGCTGAGGAGCTTGATCTCGTGCAC-GACCT 58788 Query 61158 GAATGACTGGGAGCGTTTATCGAGCGGTGAACAA----CATTTCATTAAACATGTGTTGG 61213 ||| ||||||| || | | ||| ||| | |||||||| || || ||| | | Sbjct 58787 GAAGGACTGGG-GCA---ACCTCACGGATAACGAGCGCCATTTCATCAAGCACGTGCTCG 58732 Query 61214 CGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCG 61269 | ||||| || || ||||||||||| || ||||| | || |||| ||| Sbjct 58731 CTTTCTTCGCTGCCAGCGACGGTATCGTGAACGAGAACCTGGCCAT--GAAC--TTCAGC 58676 Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 | |||||||| ||| | || || || || ||||||||||||||||||||||| ||||| Sbjct 58675 AATGAGGTGCAGGTGCCTGAAGCTCGCTGCTTCTACGGCTTCCAGATTGCCATTGAGAAC 58616 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG--AGCGGGCGGAAC 61387 | ||||||||| | ||| | |||||||| |||||||||| || | | ||| Sbjct 58615 ATTCACTCGGAGGTCTACTCGCTGCTCATCGACACGTACATCAAGGACACCATTGAGAAG 58556 Query 61388 GTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGG 61447 | || || | | ||| |||||||| || || ||| || ||| || | |||| Sbjct 58555 GACCAC-CTTCTGC-GTGCTATCGAGACCATTCCCTGTGTGCAGAAGAAGGCTAACTGGG 58498 Query 61448 CCTTCAATTGG-ATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCG 61506 || ||| ||| | ||| | | | | | | || || || | || || || Sbjct 58497 CCCTCAGGTGGTGTGACCCG-CGTGTGTCATCCTACGCGGAGCGTCTGGTTGCTTTCGCT 58439 Query 61507 GTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGT 61566 | ||| ||||| | || || ||||| || | | ||||| ||| | ||||| || Sbjct 58438 GCGGTGGAGGGCATTTTCTTTTCGGGATCCTTCTGCTCCATCTTCTGGCTCAAGAAGCGC 58379 Query 61567 GGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCAT 61626 || || ||||| ||||||| |||| || ||| | || || |||||||||||||| Sbjct 58378 GGCCTCATGCCTGGTCTGAGCTTCTCGAACGAGCTCATTAGCCGTGACGAGGGCATGCAC 58319 Query 61627 TGTGATTTTGC-TG--TTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAG 61683 ||||| || || | || ||||| | | || || || | | ||||| Sbjct 58318 ACCGATTTCGCGTGCCTCCTG-TATTC-----CAAGCTCGTCAACAAGCTGCCGGAGAGC 58265 Query 61684 CGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGA--CG 61741 || | |||||| ||||| | || || ||||| || || ||| || || || Sbjct 58264 CGCATCCATGAGATCGTTCGCAACGCTGTGGTGATCGAGCACGAGTTTGTGCGGGATTCG 58205 Query 61742 CTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTG 61801 ||| || || || || |||||||| | | || |||| ||||| || || |||| Sbjct 58204 CTT--CCGGTGGAGCTGATTGGCATGAACTCGGCGCTCATGTGCCAGTACATCGAGTTTG 58147 Query 61802 TTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCAT 61861 | || ||||| ||| || | | |||| || |||||| | | || ||||| | Sbjct 58146 TGGCTGACCGCCTGCTGTACTCTCTGGGCGTGTCCAAGATCTACCACGCCAAGAACCCGT 58087 Query 61862 TTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAG 61921 | || | ||||||||||| ||||| | |||||||| || || |||||||| ||||| | Sbjct 58086 TCGACTGGATGGACATGATCTCGCTACAGGGCAAGACCAACTTCTTCGAGAAGCGTGTGG 58027 Query 61922 GCGACTA 61928 |||| || Sbjct 58026 GCGAGTA 58020 >seq55 Length=127487 Score = 188 bits (208), Expect = 6e-43 Identities = 584/890 (66%), Gaps = 33/890 (4%) Strand=Plus/Minus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 |||||||| | ||||||||| || | | || | |||| |||||||| || || || Sbjct 36334 CGTTTCGTGCTCTTCCCCATCCAGGAGCACGACGTGTGGCAGATGTACAAGAAAGCCGAG 36275 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGG---AG 61170 || || |||||||| | ||||| |||| || | ||| |||| ||||||| || Sbjct 36274 GCATCTTTCTGGACTGCCGAGGAACTCGACCTGGTACACGACCTGAACGACTGGGCCAAG 36215 Query 61171 CGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCG 61230 | | || | ||| | || ||||| || || ||| | || || || || || Sbjct 36214 C---TGACGGACAATGAGCGCCACTTCATCAAGCACGTGCTCGCCTTTTTCGCAGCAAGT 36158 Query 61231 GACGGTATCGTCAATGAGAATTTA--TTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGG 61288 ||||||||||| || ||||| || |||| ||| | ||| | || ||| | | Sbjct 36157 GACGGTATCGTTAACGAGAACCTAGCCATGAAC--TTCAGCAATGAGATCCAGGTGCCCG 36100 Query 61289 AGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACA 61348 |||| || || |||||||| |||||||| ||||| |||||| |||||||||| | ||| Sbjct 36099 AGGCCCGCTGCTTCTACGGTTTCCAGATAGCCATTGAGAATATCCACTCGGAAGTTTACT 36040 Query 61349 GTGTTCTCATCGATACGTACATCAGGGA-GCGGGCG-GAACG-TGAACGATTGTTCAATG 61405 | || ||||| |||||||||| ||| | | || ||| | | | | || | || Sbjct 36039 CCCTGCTGATCGACACGTACATCAAGGACACAGTCGAGAAAGATTATC---TGCTGCGTG 35983 Query 61406 CCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTG----GATC 61461 ||||||||||||| ||| ||| | ||| ||| | ||||| ||| || |||| Sbjct 35982 CCATCGAGACGATCCCGTGTGTGCAAAAGAAGGCGAACTGGGCTCTCAGGTGGTGTGATC 35923 Query 61462 ACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTA 61521 | || | || | | || || ||||||| || || | || ||||| | Sbjct 35922 -CTCGT---GTGTCTTCTTACCCGGAGCGGCTGCTGGCGTTCGCAGCAGTGGAGGGCATC 35867 Query 61522 TTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGT 61581 || ||| |||||||| | | ||||| ||| | ||||| || || || ||||| ||| Sbjct 35866 TTCTTCTCGGGATCGTTCTGCTCGATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCTGGT 35807 Query 61582 CTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTG-CTG- 61639 || | |||| || ||| |||| || |||||||| ||||| ||||| | ||| Sbjct 35806 CTCAGCTTCTCGAACGAGATGATCAGCCGGGACGAGGGAATGCACACGGATTTCGCCTGC 35747 Query 61640 -TTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGATT 61698 | || || || | | || ||||| | | ||||| || || || || Sbjct 35746 CTCATG-TACTCGA-----AGCTCGTGAACAAGCTGCCGGAGAGCCGCGTACACGAAATC 35693 Query 61699 GTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTC 61758 | || || || || || || || || || || || ||| || | || || | Sbjct 35692 ATCCGCGACGCTGTCACCATTGAGCACGAGTTCGTGTGCGACTCTCTCCCTGTGGAGTTG 35633 Query 61759 ATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTG 61818 ||||||||||| | | || |||| ||||| ||||| || || || || || ||| | Sbjct 35632 ATCGGCATGAACTCAGCGCTCATGTGCCAGTACATTGAGTTCGTGGCAGATCGCCTGCTT 35573 Query 61819 GTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATG 61878 | ||||| || ||| || || ||| || ||||| || | ||||||||| Sbjct 35572 TACTCACTGGGTGTGTCCAAGATTTACAACGTGAAGAATCCATTCGACTGGATGGACATG 35513 Query 61879 ATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 || ||||| | |||||||| || |||||||||||||| || || || || Sbjct 35512 ATCTCGCTCCAGGGCAAGACAAACTTTTTCGAGAAACGGGTCGGTGAGTA 35463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397554617115680