Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq293 172 1e-40 >seq293 Length=38087 Score = 172 bits (190), Expect = 1e-40 Identities = 250/347 (72%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTAC--GTGCCAGCAGCCGCGGTAATACGTAGGGG 58 ||||| | | |||| |||||||| ||| ||||||||||||||||||||||| || Sbjct 22402 TACTTAAAAAAGAAGTTCCGGCTAA-TACCCGTGCCAGCAGCCGCGGTAATACGGGAGGA 22460 Query 59 GCTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAG 118 || ||| |||| |||||| | | |||||||||||| ||||||||||| |||||| | Sbjct 22461 GCGAGCATTATTCGGAATGATTAGGCGTAAAGGGTTTGTAGGTGGTTTTTTAAGTTGAAA 22520 Query 119 GTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGG- 177 | | | || ||||||| | ||| |||||| || |||| | Sbjct 22521 GAAACAAATTAAAGCTCAACTTTATACATTTTTTCAAAACTGATAAACTGGAGTATAAAT 22580 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || | ||||||| ||| || || | | |||| ||| |||| ||| ||||| ||| Sbjct 22581 AGAGGATAATGGAATTTCTATTGGAGTGATAAAATACGTTGATAATAGAAGGAAGACCTA 22640 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTA-ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAA 296 |||||||||| | |||| | || |||||||||||| ||||||| |||| || | Sbjct 22641 TGGCGAAGGCAATTATCTGGG-TATATACTGACACTGAGAAACGAAAGCTTGGGTAGTGA 22699 Query 297 ACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTA 343 || |||||||| |||| ||||||||| || ||||||||||| | ||| Sbjct 22700 ACGGGATTAGAGACCCCGGTAGTCCATGCTGTAAACGATGAGTGCTA 22746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203166695424