Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20multivora_20[genbank_20GCA_5F001314355.1_202015-10- 14] 2,768 sequences; 40,329,992 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq849 565 8e-159 seq1116 109 2e-21 seq1092 84.2 7e-14 >seq849 Length=9929 Score = 565 bits (626), Expect = 8e-159 Identities = 428/499 (86%), Gaps = 13/499 (3%) Strand=Plus/Minus Query 46 CCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| Sbjct 9924 CCTTAGGACACCTGTGTTATCATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 9865 Query 106 ACAATGTCATCAACCCGGATCGGCCCG-CGAAGGACC----TTAACGCCAGAAA--ATGG 158 || ||||| || || | ||| || | | || | || ||| | |||| | | Sbjct 9864 ACGATGTCTTCCACGTAGCTCGCCCGGGCAAAAGCCCAAGCTTACAACTAGAACTGAGCG 9805 Query 159 TCGGTGAAGAC---CAGTTCCG-CTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGG 214 | | || | | ||| | | | |||| | ||||||||| ||| | || ||||||| Sbjct 9804 ACCGCGAGGCCACCCAGATGCTACATCATGGTATAAGTAAAACAACATTGAGAGTAGTGG 9745 Query 215 TATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAA 274 |||||||| || | | | ||||||||||||||||||||| ||||||||||||||| Sbjct 9744 TATTTCACGGACGGCAGAGC--CTCCCACTTATTCTACACCTCCCAAGTCATTTCACAAC 9687 Query 275 GTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTT 334 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 9686 GTCAGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTATTCCAAGCCCGTT 9627 Query 335 CCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 394 ||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct 9626 CCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCATTAATCCATT 9567 Query 395 CATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 454 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9566 CATGCGCGTCACTAGTTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACT 9507 Query 455 CCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAG 514 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 9506 CCCGCCGTTTACCCGCGCTTGGTTGAATCTCTTCACTTTGACATTCAGAGCACTGGGCAG 9447 Query 515 AAATCACATTGCGTCAACA 533 ||||||||||| ||||||| Sbjct 9446 AAATCACATTGTGTCAACA 9428 >seq1116 Length=5490 Score = 109 bits (120), Expect = 2e-21 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 5402 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 5461 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAA 94 |||||||||||||||||||||||| || Sbjct 5462 ATTTAACAGATGTGCCGCCCCAGCCGAA 5489 >seq1092 Length=5687 Score = 84.2 bits (92), Expect = 7e-14 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 46 CCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 101 |||||||||||||| ||||| |||||||||||||||||||||||||||| ||||| Sbjct 6 CCTTAGGACACCTGTGTTATCATTTAACAGATGTGCCGCCCCAGCCAAACCCCCCA 61 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635154737664