Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq4784 113 3e-23 seq4308 113 3e-23 seq4185 113 3e-23 seq3471 113 3e-23 seq3385 113 3e-23 seq3065 113 3e-23 seq3045 113 3e-23 seq2968 113 3e-23 seq2935 113 3e-23 seq2780 113 3e-23 seq2733 113 3e-23 seq2691 113 3e-23 seq2243 113 3e-23 seq1805 113 3e-23 seq1768 113 3e-23 seq3573 107 1e-21 seq1711 105 4e-21 seq4674 104 1e-20 seq2566 104 1e-20 >seq4784 Length=2489 Score = 113 bits (124), Expect = 3e-23 Identities = 98/120 (82%), Gaps = 4/120 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||||||||||||||||| || ||||| || |||| |||| | ||| | Sbjct 2085 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTAAATTA-AACGACT 2143 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 2144 GCCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 2203 >seq4308 Length=3138 Score = 113 bits (124), Expect = 3e-23 Identities = 98/120 (82%), Gaps = 4/120 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||||||||||||||||| || ||||| || |||| |||| | ||| | Sbjct 1159 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTAAATTA-AACGACT 1217 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 1218 GCCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 1277 >seq4185 Length=3371 Score = 113 bits (124), Expect = 3e-23 Identities = 98/120 (82%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||||||||||||||||| || ||||| || |||| |||| | ||| | Sbjct 568 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTAAATTA-AACGACT 510 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 509 GCCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 450 >seq3471 Length=4276 Score = 113 bits (124), Expect = 3e-23 Identities = 98/120 (82%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||||||||||||||||| || ||||| || |||| |||| | ||| | Sbjct 893 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTAAATTA-AACGACT 835 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 834 GCCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 775 >seq3385 Length=4458 Score = 113 bits (124), Expect = 3e-23 Identities = 98/120 (82%), Gaps = 4/120 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||||||||||||||||| || ||||| || |||| |||| | ||| | Sbjct 118 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTAAATTA-AACGACT 176 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 177 GCCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 236 >seq3065 Length=5114 Score = 113 bits (124), Expect = 3e-23 Identities = 98/120 (82%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||||||||||||||||| || ||||| || |||| |||| | ||| | Sbjct 2422 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTAAATTA-AACGACT 2364 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 2363 GCCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 2304 >seq3045 Length=5123 Score = 113 bits (124), Expect = 3e-23 Identities = 98/120 (82%), Gaps = 4/120 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||||||||||||||||| || ||||| || |||| |||| | ||| | Sbjct 3425 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTAAATTA-AACGACT 3483 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 3484 GCCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 3543 >seq2968 Length=5267 Score = 113 bits (124), Expect = 3e-23 Identities = 98/120 (82%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||||||||||||||||| || ||||| || |||| |||| | ||| | Sbjct 659 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTAAATTA-AACGACT 601 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 600 GCCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 541 >seq2935 Length=5297 Score = 113 bits (124), Expect = 3e-23 Identities = 98/120 (82%), Gaps = 4/120 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||||||||||||||||| || ||||| || |||| |||| | ||| | Sbjct 2165 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTAAATTA-AACGACT 2223 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 2224 GCCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 2283 >seq2780 Length=5673 Score = 113 bits (124), Expect = 3e-23 Identities = 98/120 (82%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||||||||||||||||| || ||||| || |||| |||| | ||| | Sbjct 462 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTAAATTA-AACGACT 404 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 403 GCCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 344 >seq2733 Length=5762 Score = 113 bits (124), Expect = 3e-23 Identities = 98/120 (82%), Gaps = 4/120 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||||||||||||||||| || ||||| || |||| |||| | ||| | Sbjct 5060 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTAAATTA-AACGACT 5118 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 5119 GCCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 5178 >seq2691 Length=5787 Score = 113 bits (124), Expect = 3e-23 Identities = 98/120 (82%), Gaps = 4/120 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||||||||||||||||| || ||||| || |||| |||| | ||| | Sbjct 5605 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTAAATTA-AACGACT 5663 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 5664 GCCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 5723 >seq2243 Length=6976 Score = 113 bits (124), Expect = 3e-23 Identities = 98/120 (82%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||||||||||||||||| || ||||| || |||| |||| | ||| | Sbjct 289 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTAAATTA-AACGACT 231 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 230 GCCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 171 >seq1805 Length=9089 Score = 113 bits (124), Expect = 3e-23 Identities = 98/120 (82%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||||||||||||||||| || ||||| || |||| |||| | ||| | Sbjct 8453 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTAAATTA-AACGACT 8395 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 8394 GCCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 8335 >seq1768 Length=9380 Score = 113 bits (124), Expect = 3e-23 Identities = 98/120 (82%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||||||||||||||||| || ||||| || |||| |||| | ||| | Sbjct 8462 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTAAATTA-AACGACT 8404 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 8403 GCCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 8344 >seq3573 Length=4035 Score = 107 bits (118), Expect = 1e-21 Identities = 97/120 (81%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||||||||||||||||| || ||||| || |||| |||| | ||| | Sbjct 1941 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTAAATTA-AACGACT 1883 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| || ||||||||||| ||||||| ||| ||||||| Sbjct 1882 GCCAATCCCGAGTCGGCATAGTTTATGGATAAGACTACGATGGTATCTAATCATCTTCGA 1823 >seq1711 Length=9635 Score = 105 bits (116), Expect = 4e-21 Identities = 94/116 (81%), Gaps = 4/116 (3%) Strand=Plus/Plus Query 5 CCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCGCCCG 61 ||||||||||||||||||| || ||||| || |||| |||| | ||| | || Sbjct 2393 CCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTAAATTA-AACGACTGCCA 2451 Query 62 ATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 2452 ATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 2507 >seq4674 Length=2602 Score = 104 bits (114), Expect = 1e-20 Identities = 97/120 (81%), Gaps = 5/120 (4%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||||||||||||||||| || || || || |||| |||| | ||| | Sbjct 2045 GAACCCAAAGACTTTGATTTCTCATACGG-GCTGACAAGGTCATTTAAATTA-AACGACT 1988 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 1987 GCCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 1928 >seq2566 Length=6357 Score = 104 bits (114), Expect = 1e-20 Identities = 97/120 (81%), Gaps = 5/120 (4%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCA---AAATGATAACATCG 57 ||||||||||||||||||||||| || ||||| || |||| |||| | ||| | Sbjct 2808 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTAAATTA-AACGACT 2750 Query 58 CCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||| | |||||||||||||| ||||||| ||| ||||||| Sbjct 2749 GCCAATCCCGAGTCGGCATAGTT-ATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 2691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278386122630