Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq5032 113 6e-23 seq4926 113 6e-23 seq4798 113 6e-23 seq4704 113 6e-23 seq4499 113 6e-23 >seq5032 Length=1990 Score = 113 bits (124), Expect = 6e-23 Identities = 172/243 (71%), Gaps = 13/243 (5%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 323 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 265 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||| ||||||||||| ||| ||||| | || ||| ||| | | Sbjct 264 AAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACC---------TCATTATTT 214 Query 127 CGTTCACCAGCAGT-GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | | | | || || || |||||||||||| | ||||||||||| ||||| Sbjct 213 TTTTTAATA--ATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCT 156 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | | | ||||| | | | ||||||| | ||| |||| ||||||||||||||||| | Sbjct 155 TCAATATAGTTCTCTCATTCACCTTAGTCTACTCGACCTATCCACCTGTGTCGGTTTAGG 96 Query 246 GTA 248 ||| Sbjct 95 GTA 93 >seq4926 Length=2181 Score = 113 bits (124), Expect = 6e-23 Identities = 172/243 (71%), Gaps = 13/243 (5%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 675 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 617 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||| ||||||||||| ||| ||||| | || ||| ||| | | Sbjct 616 AAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACC---------TCATTATTT 566 Query 127 CGTTCACCAGCAGT-GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | | | | || || || |||||||||||| | ||||||||||| ||||| Sbjct 565 TTTTTAATA--ATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCT 508 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | | | ||||| | | | ||||||| | ||| |||| ||||||||||||||||| | Sbjct 507 TCAATATAGTTCTCTCATTCACCTTAGTCTACTCGACCTATCCACCTGTGTCGGTTTAGG 448 Query 246 GTA 248 ||| Sbjct 447 GTA 445 >seq4798 Length=2370 Score = 113 bits (124), Expect = 6e-23 Identities = 172/243 (71%), Gaps = 13/243 (5%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 390 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 332 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||| ||||||||||| ||| ||||| | || ||| ||| | | Sbjct 331 AAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACC---------TCATTATTT 281 Query 127 CGTTCACCAGCAGT-GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | | | | || || || |||||||||||| | ||||||||||| ||||| Sbjct 280 TTTTTAATA--ATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCT 223 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | | | ||||| | | | ||||||| | ||| |||| ||||||||||||||||| | Sbjct 222 TCAATATAGTTCTCTCATTCACCTTAGTCTACTCGACCTATCCACCTGTGTCGGTTTAGG 163 Query 246 GTA 248 ||| Sbjct 162 GTA 160 >seq4704 Length=2492 Score = 113 bits (124), Expect = 6e-23 Identities = 172/243 (71%), Gaps = 13/243 (5%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 1043 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 985 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||| ||||||||||| ||| ||||| | || ||| ||| | | Sbjct 984 AAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACC---------TCATTATTT 934 Query 127 CGTTCACCAGCAGT-GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | | | | || || || |||||||||||| | ||||||||||| ||||| Sbjct 933 TTTTTAATA--ATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCT 876 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | | | ||||| | | | ||||||| | ||| |||| ||||||||||||||||| | Sbjct 875 TCAATATAGTTCTCTCATTCACCTTAGTCTACTCGACCTATCCACCTGTGTCGGTTTAGG 816 Query 246 GTA 248 ||| Sbjct 815 GTA 813 >seq4499 Length=2789 Score = 113 bits (124), Expect = 6e-23 Identities = 172/243 (71%), Gaps = 13/243 (5%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 1591 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 1533 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||| ||||||||||| ||| ||||| | || ||| ||| | | Sbjct 1532 AAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACC---------TCATTATTT 1482 Query 127 CGTTCACCAGCAGT-GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | | | | || || || |||||||||||| | ||||||||||| ||||| Sbjct 1481 TTTTTAATA--ATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCT 1424 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | | | ||||| | | | ||||||| | ||| |||| ||||||||||||||||| | Sbjct 1423 TCAATATAGTTCTCTCATTCACCTTAGTCTACTCGACCTATCCACCTGTGTCGGTTTAGG 1364 Query 246 GTA 248 ||| Sbjct 1363 GTA 1361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694364232541