Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12-
29] 5,317 sequences; 71,413,976 total letters
Query= AAMG01000753.1
Length=364
Score E
Sequences producing significant alignments: (Bits) Value
seq5032 242 8e-62
seq4926 242 8e-62
seq4798 242 8e-62
seq4704 242 8e-62
seq4499 239 1e-60
>seq5032
Length=1990
Score = 242 bits (268), Expect = 8e-62
Identities = 273/369 (74%), Gaps = 20/369 (5%)
Strand=Plus/Minus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
|||||||||| | | | ||| ||||| |||||||| | ||||||| | | |||||
Sbjct 501 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 442
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126
|| || ||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 441 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 382
Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186
||||||||||||||||||||||| || | | | | ||| | |||| |||
Sbjct 381 GAGTTACGGCCGCCGTTTACTGGGACT---------TCCATTTAATGCGCAAACATCTCC 331
Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246
|||| |||||||||||||||||| ||||| |||||||||| | || | | |||||||
Sbjct 330 TTTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAG 271
Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC-----------T 295
| ||| |||||| ||||||||||| |||||| | || || |
Sbjct 270 AGTCCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACCTCATTATTTTTT 211
Query 296 GTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACA 355
| ||| ||| || || |||| ||||||| |||||||||||||||||||| |
Sbjct 210 TTAATAATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTTCAAT 151
Query 356 ATAGTTCTC 364
|||||||||
Sbjct 150 ATAGTTCTC 142
>seq4926
Length=2181
Score = 242 bits (268), Expect = 8e-62
Identities = 273/369 (74%), Gaps = 20/369 (5%)
Strand=Plus/Minus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
|||||||||| | | | ||| ||||| |||||||| | ||||||| | | |||||
Sbjct 853 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 794
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126
|| || ||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 793 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 734
Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186
||||||||||||||||||||||| || | | | | ||| | |||| |||
Sbjct 733 GAGTTACGGCCGCCGTTTACTGGGACT---------TCCATTTAATGCGCAAACATCTCC 683
Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246
|||| |||||||||||||||||| ||||| |||||||||| | || | | |||||||
Sbjct 682 TTTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAG 623
Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC-----------T 295
| ||| |||||| ||||||||||| |||||| | || || |
Sbjct 622 AGTCCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACCTCATTATTTTTT 563
Query 296 GTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACA 355
| ||| ||| || || |||| ||||||| |||||||||||||||||||| |
Sbjct 562 TTAATAATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTTCAAT 503
Query 356 ATAGTTCTC 364
|||||||||
Sbjct 502 ATAGTTCTC 494
>seq4798
Length=2370
Score = 242 bits (268), Expect = 8e-62
Identities = 273/369 (74%), Gaps = 20/369 (5%)
Strand=Plus/Minus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
|||||||||| | | | ||| ||||| |||||||| | ||||||| | | |||||
Sbjct 568 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 509
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126
|| || ||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 508 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 449
Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186
||||||||||||||||||||||| || | | | | ||| | |||| |||
Sbjct 448 GAGTTACGGCCGCCGTTTACTGGGACT---------TCCATTTAATGCGCAAACATCTCC 398
Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246
|||| |||||||||||||||||| ||||| |||||||||| | || | | |||||||
Sbjct 397 TTTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAG 338
Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC-----------T 295
| ||| |||||| ||||||||||| |||||| | || || |
Sbjct 337 AGTCCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACCTCATTATTTTTT 278
Query 296 GTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACA 355
| ||| ||| || || |||| ||||||| |||||||||||||||||||| |
Sbjct 277 TTAATAATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTTCAAT 218
Query 356 ATAGTTCTC 364
|||||||||
Sbjct 217 ATAGTTCTC 209
>seq4704
Length=2492
Score = 242 bits (268), Expect = 8e-62
Identities = 273/369 (74%), Gaps = 20/369 (5%)
Strand=Plus/Minus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
|||||||||| | | | ||| ||||| |||||||| | ||||||| | | |||||
Sbjct 1221 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 1162
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126
|| || ||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1161 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 1102
Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186
||||||||||||||||||||||| || | | | | ||| | |||| |||
Sbjct 1101 GAGTTACGGCCGCCGTTTACTGGGACT---------TCCATTTAATGCGCAAACATCTCC 1051
Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246
|||| |||||||||||||||||| ||||| |||||||||| | || | | |||||||
Sbjct 1050 TTTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAG 991
Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC-----------T 295
| ||| |||||| ||||||||||| |||||| | || || |
Sbjct 990 AGTCCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACCTCATTATTTTTT 931
Query 296 GTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACA 355
| ||| ||| || || |||| ||||||| |||||||||||||||||||| |
Sbjct 930 TTAATAATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTTCAAT 871
Query 356 ATAGTTCTC 364
|||||||||
Sbjct 870 ATAGTTCTC 862
>seq4499
Length=2789
Score = 239 bits (264), Expect = 1e-60
Identities = 273/369 (74%), Gaps = 21/369 (6%)
Strand=Plus/Minus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
|||||||||| | | | ||| ||||| |||||||| | ||||||| | | |||||
Sbjct 1768 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGG-ATGTCGTT 1710
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126
|| || ||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1709 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 1650
Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186
||||||||||||||||||||||| || | | | | ||| | |||| |||
Sbjct 1649 GAGTTACGGCCGCCGTTTACTGGGACT---------TCCATTTAATGCGCAAACATCTCC 1599
Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246
|||| |||||||||||||||||| ||||| |||||||||| | || | | |||||||
Sbjct 1598 TTTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAG 1539
Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC-----------T 295
| ||| |||||| ||||||||||| |||||| | || || |
Sbjct 1538 AGTCCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACCTCATTATTTTTT 1479
Query 296 GTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACA 355
| ||| ||| || || |||| ||||||| |||||||||||||||||||| |
Sbjct 1478 TTAATAATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTTCAAT 1419
Query 356 ATAGTTCTC 364
|||||||||
Sbjct 1418 ATAGTTCTC 1410
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1062343512192
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |