Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq4926 111 3e-22 seq4798 111 3e-22 seq4704 111 3e-22 seq4499 111 3e-22 seq5032 104 5e-20 >seq4926 Length=2181 Score = 111 bits (122), Expect = 3e-22 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC 186 || |||||||||||||||||| ||||| ||||||||||||||| | ||||| || ||| Sbjct 1046 GGTAGTTTGACTGGGGCGGTCACCTCCTAAAGAGTAACGGAGGTGTACAAAGGTAAGCTC 1105 Query 187 AGCTTGGATGGAA--ACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACAC 244 | |||||| | | || | | || || || ||||| || ||||||| | | Sbjct 1106 AAATTGGATAATAGTATCAATTGTAGAGCATAATGGTAAAAGCTTGCTTGACTGTAAGAT 1165 Query 245 CCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGG 304 || || | |||||||||||||||| | || ||||||| | || ||||| | Sbjct 1166 AGACATATCAAACAGGGACGAAAGTCGGTCATAGTGATCCGATAATTCTTTGTGGAAAGA 1225 Query 305 CCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| ||||||||||| ||| | ||||||| Sbjct 1226 TTATCGCTCAACGGATAAAAGGTACTCCGGGGATA 1260 >seq4798 Length=2370 Score = 111 bits (122), Expect = 3e-22 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC 186 || |||||||||||||||||| ||||| ||||||||||||||| | ||||| || ||| Sbjct 761 GGTAGTTTGACTGGGGCGGTCACCTCCTAAAGAGTAACGGAGGTGTACAAAGGTAAGCTC 820 Query 187 AGCTTGGATGGAA--ACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACAC 244 | |||||| | | || | | || || || ||||| || ||||||| | | Sbjct 821 AAATTGGATAATAGTATCAATTGTAGAGCATAATGGTAAAAGCTTGCTTGACTGTAAGAT 880 Query 245 CCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGG 304 || || | |||||||||||||||| | || ||||||| | || ||||| | Sbjct 881 AGACATATCAAACAGGGACGAAAGTCGGTCATAGTGATCCGATAATTCTTTGTGGAAAGA 940 Query 305 CCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| ||||||||||| ||| | ||||||| Sbjct 941 TTATCGCTCAACGGATAAAAGGTACTCCGGGGATA 975 >seq4704 Length=2492 Score = 111 bits (122), Expect = 3e-22 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC 186 || |||||||||||||||||| ||||| ||||||||||||||| | ||||| || ||| Sbjct 1414 GGTAGTTTGACTGGGGCGGTCACCTCCTAAAGAGTAACGGAGGTGTACAAAGGTAAGCTC 1473 Query 187 AGCTTGGATGGAA--ACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACAC 244 | |||||| | | || | | || || || ||||| || ||||||| | | Sbjct 1474 AAATTGGATAATAGTATCAATTGTAGAGCATAATGGTAAAAGCTTGCTTGACTGTAAGAT 1533 Query 245 CCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGG 304 || || | |||||||||||||||| | || ||||||| | || ||||| | Sbjct 1534 AGACATATCAAACAGGGACGAAAGTCGGTCATAGTGATCCGATAATTCTTTGTGGAAAGA 1593 Query 305 CCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| ||||||||||| ||| | ||||||| Sbjct 1594 TTATCGCTCAACGGATAAAAGGTACTCCGGGGATA 1628 >seq4499 Length=2789 Score = 111 bits (122), Expect = 3e-22 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC 186 || |||||||||||||||||| ||||| ||||||||||||||| | ||||| || ||| Sbjct 1961 GGTAGTTTGACTGGGGCGGTCACCTCCTAAAGAGTAACGGAGGTGTACAAAGGTAAGCTC 2020 Query 187 AGCTTGGATGGAA--ACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACAC 244 | |||||| | | || | | || || || ||||| || ||||||| | | Sbjct 2021 AAATTGGATAATAGTATCAATTGTAGAGCATAATGGTAAAAGCTTGCTTGACTGTAAGAT 2080 Query 245 CCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGG 304 || || | |||||||||||||||| | || ||||||| | || ||||| | Sbjct 2081 AGACATATCAAACAGGGACGAAAGTCGGTCATAGTGATCCGATAATTCTTTGTGGAAAGA 2140 Query 305 CCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| ||||||||||| ||| | ||||||| Sbjct 2141 TTATCGCTCAACGGATAAAAGGTACTCCGGGGATA 2175 >seq5032 Length=1990 Score = 104 bits (114), Expect = 5e-20 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC 186 || |||||||||||||||||| ||||| ||||||||||||||| | ||||| || ||| Sbjct 694 GGTAGTTTGACTGGGGCGGTCACCTCCTAAAGAGTAACGGAGGTGTACAAAGGTAAGCTC 753 Query 187 AGCTTGGATGGAA--ACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACAC 244 | |||||| | | || | | || || || ||||| || ||||||| | | Sbjct 754 AAATTGGATAATAGTATCAATTGTAGAGCATAATGGTAAAAGCTTGCTTGACTGTAAGAT 813 Query 245 CCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGG 304 || || | |||||||||||||||| | || ||||||| | || ||||| | Sbjct 814 AGACATATCAAACAGGGACGAAAGTCGGTCATAGTGATCCGATAATTCTTTGTGGAAAGA 873 Query 305 CCGTCGCTCGACGGATAAAAGCTACCCTGGG 335 |||||| ||||||||||| ||| | ||| Sbjct 874 TTATCGCTCAACGGATAAAAGGTACTCCGGG 904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982347765792