Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq4499 127 5e-27 seq4704 120 7e-25 seq4926 107 5e-21 >seq4499 Length=2789 Score = 127 bits (140), Expect = 5e-27 Identities = 144/189 (76%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAG 271 ||||||| || |||||| | || |||||| | ||||| || ||| ||||| |||| Sbjct 1054 GCTTCGGTAAATTTCTTAAGTCTCGATACATTTTAGGCGCAAAAAAACTAGACCAATGAG 995 Query 272 CTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAA 331 ||||||||| ||||| ||||||||||||||||||||| |||| |||||||| | Sbjct 994 CTATTACGCTTTCTTTAAAGGATGGCTGCTTCCAAGCCTACCTACTGGTTGTAATCATTT 935 Query 332 CTCCACATCCTTTCCCACTGAG-TCACCACTTAGGGGCCTTAGCTGAT-GATCTGGGCTG 389 | ||| |||||| |||| || | | |||| | ||||||| ||| |||||||||| Sbjct 934 TTTCACTTCCTTTTTCACTTAGAATATTATTTAGAGACCTTAGC-GATCAATCTGGGCTG 876 Query 390 TTTCCCTCT 398 ||||||||| Sbjct 875 TTTCCCTCT 867 >seq4704 Length=2492 Score = 120 bits (132), Expect = 7e-25 Identities = 140/185 (76%), Gaps = 3/185 (2%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAG 271 ||||||| || |||||| | || |||||| | ||||| || ||| ||||| |||| Sbjct 507 GCTTCGGTAAATTTCTTAAGTCTCGATACATTTTAGGCGCAAAAAAACTAGACCAATGAG 448 Query 272 CTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAA 331 ||||||||| ||||| ||||||||||||||||||||| |||| |||||||| | Sbjct 447 CTATTACGCTTTCTTTAAAGGATGGCTGCTTCCAAGCCTACCTACTGGTTGTAATCATTT 388 Query 332 CTCCACATCCTTTCCCACTGAG-TCACCACTTAGGGGCCTTAGCTGAT-GATCTGGGCTG 389 | ||| |||||| |||| || | | |||| | ||||||| ||| |||||||||| Sbjct 387 TTTCACTTCCTTTTTCACTTAGAATATTATTTAGAGACCTTAGC-GATCAATCTGGGCTG 329 Query 390 TTTCC 394 ||||| Sbjct 328 TTTCC 324 >seq4926 Length=2181 Score = 107 bits (118), Expect = 5e-21 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAG 271 ||||||| || |||||| | || |||||| | ||||| || ||| ||||| |||| Sbjct 142 GCTTCGGTAAATTTCTTAAGTCTCGATACATTTTAGGCGCAAAAAAACTAGACCAATGAG 83 Query 272 CTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGT 323 ||||||||| ||||| ||||||||||||||||||||| |||| |||||||| Sbjct 82 CTATTACGCTTTCTTTAAAGGATGGCTGCTTCCAAGCCTACCTACTGGTTGT 31 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177537387008