Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq4926 163 4e-38 seq4499 163 4e-38 seq5032 156 7e-36 seq4798 156 7e-36 seq4704 156 7e-36 >seq4926 Length=2181 Score = 163 bits (180), Expect = 4e-38 Identities = 193/260 (74%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 ||||||||| ||||| |||||| ||| |||||| | | || |||| || Sbjct 1566 CTTAGATGCTTTCAGTAATTATCCAAAATAAATTTAGCTACTCGGCGATGCCTTTTA--- 1510 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||| | | |||||||| ||| || || |||||||||||||||| | || | || Sbjct 1509 -ACAACCGATACACCAGAGATTTACCCTTCTCGGTCCTCTCGTACTAGAGTTAGATTCTT 1451 Query 137 TCAAATTTCCTACGCCCACGACG-GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||| |||| | | | |||||| ||| ||||||||| ||||||||| ||||| Sbjct 1450 TCATTTTTCAAAATATCTATAGAAGATAGGAACCAAACTGTCTCACGACGTTCTAAACCC 1391 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 | ||| ||| || ||||||| ||||||||||| ||||||||| |||| ||||||| |||| Sbjct 1390 AACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGAACCTTCTTCAGCTCCAG 1331 Query 256 GATGAGACGAGCCGACATCG 275 |||| || ||| |||||||| Sbjct 1330 GATGTGATGAGTCGACATCG 1311 >seq4499 Length=2789 Score = 163 bits (180), Expect = 4e-38 Identities = 193/260 (74%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 ||||||||| ||||| |||||| ||| |||||| | | || |||| || Sbjct 2481 CTTAGATGCTTTCAGTAATTATCCAAAATAAATTTAGCTACTCGGCGATGCCTTTTA--- 2425 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||| | | |||||||| ||| || || |||||||||||||||| | || | || Sbjct 2424 -ACAACCGATACACCAGAGATTTACCCTTCTCGGTCCTCTCGTACTAGAGTTAGATTCTT 2366 Query 137 TCAAATTTCCTACGCCCACGACG-GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||| |||| | | | |||||| ||| ||||||||| ||||||||| ||||| Sbjct 2365 TCATTTTTCAAAATATCTATAGAAGATAGGAACCAAACTGTCTCACGACGTTCTAAACCC 2306 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 | ||| ||| || ||||||| ||||||||||| ||||||||| |||| ||||||| |||| Sbjct 2305 AACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGAACCTTCTTCAGCTCCAG 2246 Query 256 GATGAGACGAGCCGACATCG 275 |||| || ||| |||||||| Sbjct 2245 GATGTGATGAGTCGACATCG 2226 >seq5032 Length=1990 Score = 156 bits (172), Expect = 7e-36 Identities = 192/260 (74%), Gaps = 7/260 (3%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 ||||||||| ||||| |||||| ||| |||||| | | || |||| || Sbjct 1211 CTTAGATGCTTTCAGTAATTATCCAAAATAAATTTAGCTACTCGGCGATGCCTTTTA--- 1155 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||| | | |||||||| ||| || || |||||||||||||||| | || | || Sbjct 1154 -ACAACCGATACACCAGAGATTTACCCTTCTCGGTCCTCTCGTACTAGAGTTAGATTCTT 1096 Query 137 TCAAATTTCCTACGCCCACGACG-GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||| |||| | | | |||||| ||| ||||||||| ||||||||| ||||| Sbjct 1095 TCATTTTTCAAAATATCTATAGAAGATAGGAACCAAACTGTCTCACGACGTTCTAAACCC 1036 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 | ||| ||| || ||||||| ||||||||||| ||||||||| |||| ||||||| |||| Sbjct 1035 AACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGAACCTTCTTCAGCTCCAG 976 Query 256 GATGAGACGAGCCGACATCG 275 ||| || ||| |||||||| Sbjct 975 GAT--GATGAGTCGACATCG 958 >seq4798 Length=2370 Score = 156 bits (172), Expect = 7e-36 Identities = 193/261 (74%), Gaps = 6/261 (2%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 ||||||||| ||||| |||||| ||| |||||| | | || |||| || Sbjct 1282 CTTAGATGCTTTCAGTAATTATCCAAAATAAATTTAGCTACTCGGCGATGCCTTTTA--- 1226 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||| | | |||||||| ||| || || |||||||||||||||| | || | || Sbjct 1225 -ACAACCGATACACCAGAGATTTACCCTTCTCGGTCCTCTCGTACTAGAGTTAGATTCTT 1167 Query 137 TCAAATTTCCTACGCCCACGACG-GATAGGGACCGAACTGTCTCGCGACGTTCTGAA-CC 194 ||| |||| | | | |||||| ||| ||||||||| ||||||||| || || Sbjct 1166 TCATTTTTCAAAATATCTATAGAAGATAGGAACCAAACTGTCTCACGACGTTCTAAAACC 1107 Query 195 CAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254 || ||| ||| || ||||||| ||||||||||| ||||||||| |||| ||||||| ||| Sbjct 1106 CAACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGAACCTTCTTCAGCTCCA 1047 Query 255 GGATGAGACGAGCCGACATCG 275 ||||| || ||| |||||||| Sbjct 1046 GGATGTGATGAGTCGACATCG 1026 >seq4704 Length=2492 Score = 156 bits (172), Expect = 7e-36 Identities = 191/259 (74%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 ||||||||| ||||| |||||| ||| |||||| | | || |||| || Sbjct 1932 CTTAGATGCTTTCAGTAATTATCCAAAATAAATTTAGCTACTC-GCGATGCCTTTTA--- 1877 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||| | | |||||||| ||| || || |||||||||||||||| | || | || Sbjct 1876 -ACAACCGATACACCAGAGATTTACCCTTCTCGGTCCTCTCGTACTAGAGTTAGATTCTT 1818 Query 137 TCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCA 196 ||| || | | | |||||| ||| ||||||||| ||||||||| |||||| Sbjct 1817 TCATTTTCAAAATATCTATAGAAGATAGGAACCAAACTGTCTCACGACGTTCTAAACCCA 1758 Query 197 GCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGG 256 ||| ||| || ||||||| ||||||||||| ||||||||| |||| ||||||| ||||| Sbjct 1757 ACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGAACCTTCTTCAGCTCCAGG 1698 Query 257 ATGAGACGAGCCGACATCG 275 ||| || ||| |||||||| Sbjct 1697 ATGTGATGAGTCGACATCG 1679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780759782212