Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq4499 150 6e-34 seq4704 141 3e-31 >seq4499 Length=2789 Score = 150 bits (166), Expect = 6e-34 Identities = 310/453 (68%), Gaps = 15/453 (3%) Strand=Plus/Plus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||||| ||||||||| ||||| ||| |||| ||||| || |||| Sbjct 564 AGACCCGAAACTGAGTGATCTAACCATGAACAGATTGAAAAATAGGTAAAACTATTTGGA 623 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || ||||| ||| |||| | ||||| || ||||| ||||| |||| |||||||||| Sbjct 624 GGATCGAACTCACATATGTGGCAAAATATGGAGATGATTTGTGGTTAGGAGTGAAAGGCT 683 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || |||||| || |||||||||| || ||||| ||||| | |||| || | | ||| Sbjct 684 AATCAAACTCAGAGATAGCTGGTTTTCCGCGAAATCTATTGAAGTAGAGCATTTAAAATC 743 Query 214 ACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGC 273 | ||||||||||||| | ||||||||| | | |||||| ||| ||| Sbjct 744 TTTTTTTGGGGTAGAGCACTCATTGAGCTAGGGGG-CGTAAAAACTTACTAAATTCTTGG 802 Query 274 AAACTCCGAATGCGCATCA----GTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTC 329 ||||||||||| | | | | |||| || || | || ||||||||| Sbjct 803 AAACTCCGAATACAAAAAAAAGTGATTTA----AATAGACAGACATTAGGCGCTAAGGTC 858 Query 330 CGTGCCCGAGAGGAGAAGAATCCGGACT-ATCAGCTAAGGCCCCGAAATGACA-GCTAAG 387 | | ||||| || | || || | ||| ||||||| | | |||| | | ||||| Sbjct 859 TTTTGTCAAGAGGGAAACAGCCCAGATTGATC-GCTAAGGTCTCTAAATAATATTCTAAG 917 Query 388 TTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTC 447 | ||| || ||||| | | ||| | || | || |||||||||||||||| || Sbjct 918 TGAAA--AAGGAAGTGAAAAAATGATTACAACCAGTAGGTAGGCTTGGAAGCAGCCA-TC 974 Query 448 ATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||||| |||||| |||||| | ||| || Sbjct 975 CTTTAAAGAAAGCGTAATAGCTCATTGGTCTAG 1007 >seq4704 Length=2492 Score = 141 bits (156), Expect = 3e-31 Identities = 310/452 (69%), Gaps = 17/452 (4%) Strand=Plus/Plus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||||| ||||||||| ||||| ||| |||| ||||| || |||| Sbjct 21 AGACCCGAAACTGAGTGATCTAACCATGAACAGATTGAAAAATAGGTAAAACTATTTGGA 80 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || ||||| ||| |||| | ||||| || ||||| ||||| |||| |||||||||| Sbjct 81 GGATCGAACTCACATATGT-GCAAAATATGGAGATGATTTGTGGTTAGGAGTGAAAGGCT 139 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || |||||| || |||||||||| || ||||| ||||| | |||| || | | ||| Sbjct 140 AATCAAACTCAGAGATAGCTGGTTTTCCGCGAAATCTATTGAAGTAGAGCATTTAAAATC 199 Query 214 ACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGC 273 | |||||||||||| | ||||||||| | | |||||| ||| ||| Sbjct 200 -TTTTTTTGGGTAGAGCACTCATTGAGCTAGGGGG-CGTAAAAACTTACTAAATTCTTGG 257 Query 274 AAACTCCGAATGCGCATCA---GTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCC 330 ||||||||||| | | | | |||| || || | || ||||||||| Sbjct 258 AAACTCCGAATACAAAAAAAGTGATTTA----AATAGACAGACATTAGGCGCTAAGGTCT 313 Query 331 GTGCCCGAGAGGAGAAGAATCCGGACT-ATCAGCTAAGGCCCCGAAATGACA-GCTAAGT 388 | | |||||| || | || || | ||| ||||||| | | |||| | | |||||| Sbjct 314 TTTGTCAAGAGGA-AACAGCCCAGATTGATC-GCTAAGGTCTCTAAATAATATTCTAAGT 371 Query 389 TAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCA 448 ||| || ||||| | | ||| | || | || |||||||||||||||| || Sbjct 372 GAAA--AAGGAAGTGAAAAAATGATTACAACCAGTAGGTAGGCTTGGAAGCAGCCA-TCC 428 Query 449 TTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||||| |||||| |||||| | ||| || Sbjct 429 TTTAAAGAAAGCGTAATAGCTCATTGGTCTAG 460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689510163968