Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq5032 192 2e-46 seq4798 192 2e-46 seq4704 192 2e-46 seq4499 188 2e-45 seq4926 187 8e-45 >seq5032 Length=1990 Score = 192 bits (212), Expect = 2e-46 Identities = 336/490 (69%), Gaps = 32/490 (7%) Strand=Plus/Minus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||||| | |||||||||| ||| ||||| | |||||||||| |||||||| |||| Sbjct 747 ACCTTTGTACACCTCCGTTACTCTTTAGGAGGTGA-CCGCCCCAGTCAAACTACCAACCA 689 Query 136 GGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAGTGGT 195 || |||| || | || |||| ||| | || | |||||||| Sbjct 688 TACAATGTCT---------ATT-TAAAAAAATATTAGTTATTTATTATAATAAGAGTGGT 639 Query 196 ATTTCAACAACGACTCCACAACC-ACTAGCGTGGCCGCATCATAGTCTCCCACCTATCCT 254 ||||||| || || |||| |||||||| | | | | | |||| ||| || Sbjct 638 ATTTCAAGAATATCTAAACAATTTACTAGCGTAAAGGTCTAAACGATTACCACTTATACT 579 Query 255 ACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGT 313 ||||| | | ||| ||||| ||| | |||| ||||| | |||||||||| ||| Sbjct 578 ACACATATTAGATAAAATAACAATATAAAGATGTAGTAAAGGTTCACGGGGTCTTTCCGT 519 Query 314 CCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAG 373 | | ||| ||||||| || || | ||| ||||| | | || | | ||| Sbjct 518 CTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAG 459 Query 374 ACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCG 433 ||||| ||| |||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 458 ACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCG 399 Query 434 CTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCA 493 ||||||||||| || | |||||| ||||||||||||||| |||| ||| Sbjct 398 CTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGACTTCCATT---------- 349 Query 494 CACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTC 553 | || || || |||| |||| |||||||||||||||||| ||||| | Sbjct 348 ---------TAATGCGCAAACATCTCCTTTTAATCTTCCAGCACCGGGCAGGTGTCAGAC 298 Query 554 CGTATACCTC 563 | ||||| || Sbjct 297 CCTATACATC 288 >seq4798 Length=2370 Score = 192 bits (212), Expect = 2e-46 Identities = 336/490 (69%), Gaps = 32/490 (7%) Strand=Plus/Minus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||||| | |||||||||| ||| ||||| | |||||||||| |||||||| |||| Sbjct 814 ACCTTTGTACACCTCCGTTACTCTTTAGGAGGTGA-CCGCCCCAGTCAAACTACCAACCA 756 Query 136 GGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAGTGGT 195 || |||| || | || |||| ||| | || | |||||||| Sbjct 755 TACAATGTCT---------ATT-TAAAAAAATATTAGTTATTTATTATAATAAGAGTGGT 706 Query 196 ATTTCAACAACGACTCCACAACC-ACTAGCGTGGCCGCATCATAGTCTCCCACCTATCCT 254 ||||||| || || |||| |||||||| | | | | | |||| ||| || Sbjct 705 ATTTCAAGAATATCTAAACAATTTACTAGCGTAAAGGTCTAAACGATTACCACTTATACT 646 Query 255 ACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGT 313 ||||| | | ||| ||||| ||| | |||| ||||| | |||||||||| ||| Sbjct 645 ACACATATTAGATAAAATAACAATATAAAGATGTAGTAAAGGTTCACGGGGTCTTTCCGT 586 Query 314 CCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAG 373 | | ||| ||||||| || || | ||| ||||| | | || | | ||| Sbjct 585 CTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAG 526 Query 374 ACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCG 433 ||||| ||| |||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 525 ACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCG 466 Query 434 CTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCA 493 ||||||||||| || | |||||| ||||||||||||||| |||| ||| Sbjct 465 CTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGACTTCCATT---------- 416 Query 494 CACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTC 553 | || || || |||| |||| |||||||||||||||||| ||||| | Sbjct 415 ---------TAATGCGCAAACATCTCCTTTTAATCTTCCAGCACCGGGCAGGTGTCAGAC 365 Query 554 CGTATACCTC 563 | ||||| || Sbjct 364 CCTATACATC 355 >seq4704 Length=2492 Score = 192 bits (212), Expect = 2e-46 Identities = 336/490 (69%), Gaps = 32/490 (7%) Strand=Plus/Minus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||||| | |||||||||| ||| ||||| | |||||||||| |||||||| |||| Sbjct 1467 ACCTTTGTACACCTCCGTTACTCTTTAGGAGGTGA-CCGCCCCAGTCAAACTACCAACCA 1409 Query 136 GGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAGTGGT 195 || |||| || | || |||| ||| | || | |||||||| Sbjct 1408 TACAATGTCT---------ATT-TAAAAAAATATTAGTTATTTATTATAATAAGAGTGGT 1359 Query 196 ATTTCAACAACGACTCCACAACC-ACTAGCGTGGCCGCATCATAGTCTCCCACCTATCCT 254 ||||||| || || |||| |||||||| | | | | | |||| ||| || Sbjct 1358 ATTTCAAGAATATCTAAACAATTTACTAGCGTAAAGGTCTAAACGATTACCACTTATACT 1299 Query 255 ACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGT 313 ||||| | | ||| ||||| ||| | |||| ||||| | |||||||||| ||| Sbjct 1298 ACACATATTAGATAAAATAACAATATAAAGATGTAGTAAAGGTTCACGGGGTCTTTCCGT 1239 Query 314 CCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAG 373 | | ||| ||||||| || || | ||| ||||| | | || | | ||| Sbjct 1238 CTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAG 1179 Query 374 ACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCG 433 ||||| ||| |||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 1178 ACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCG 1119 Query 434 CTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCA 493 ||||||||||| || | |||||| ||||||||||||||| |||| ||| Sbjct 1118 CTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGACTTCCATT---------- 1069 Query 494 CACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTC 553 | || || || |||| |||| |||||||||||||||||| ||||| | Sbjct 1068 ---------TAATGCGCAAACATCTCCTTTTAATCTTCCAGCACCGGGCAGGTGTCAGAC 1018 Query 554 CGTATACCTC 563 | ||||| || Sbjct 1017 CCTATACATC 1008 >seq4499 Length=2789 Score = 188 bits (208), Expect = 2e-45 Identities = 336/490 (69%), Gaps = 33/490 (7%) Strand=Plus/Minus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||||| | |||||||||| ||| ||||| | |||||||||| |||||||| |||| Sbjct 2014 ACCTTTGTACACCTCCGTTACTCTTTAGGAGGTGA-CCGCCCCAGTCAAACTACCAACCA 1956 Query 136 GGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAGTGGT 195 || |||| || | || |||| ||| | || | |||||||| Sbjct 1955 TACAATGTCT---------ATT-TAAAAAAATATTAGTTATTTATTATAATAAGAGTGGT 1906 Query 196 ATTTCAACAACGACTCCACAACC-ACTAGCGTGGCCGCATCATAGTCTCCCACCTATCCT 254 ||||||| || || |||| |||||||| | | | | | |||| ||| || Sbjct 1905 ATTTCAAGAATATCTAAACAATTTACTAGCGTAAAGGTCTAAACGATTACCACTTATACT 1846 Query 255 ACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGT 313 ||||| | | ||| ||||| ||| | |||| ||||| | |||||||||| ||| Sbjct 1845 ACACATATTAGATAAAATAACAATATAAAGATGTAGTAAAGGTTCACGGGGTCTTTCCGT 1786 Query 314 CCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAG 373 | | ||| ||||||| || || | ||| ||||| | | || | | ||| Sbjct 1785 CTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAG 1726 Query 374 ACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCG 433 ||||| ||| |||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 1725 ACAGC-GGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCG 1667 Query 434 CTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCA 493 ||||||||||| || | |||||| ||||||||||||||| |||| ||| Sbjct 1666 CTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGACTTCCATT---------- 1617 Query 494 CACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTC 553 | || || || |||| |||| |||||||||||||||||| ||||| | Sbjct 1616 ---------TAATGCGCAAACATCTCCTTTTAATCTTCCAGCACCGGGCAGGTGTCAGAC 1566 Query 554 CGTATACCTC 563 | ||||| || Sbjct 1565 CCTATACATC 1556 >seq4926 Length=2181 Score = 187 bits (206), Expect = 8e-45 Identities = 335/490 (68%), Gaps = 32/490 (7%) Strand=Plus/Minus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||||| | |||||||||| ||| ||||| | |||||||||| |||||||| |||| Sbjct 1099 ACCTTTGTACACCTCCGTTACTCTTTAGGAGGTGA-CCGCCCCAGTCAAACTACCAACCA 1041 Query 136 GGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAGTGGT 195 || |||| || | || |||| | | | || | |||||||| Sbjct 1040 TACAATGTCT---------ATT-TAAAAAAATATTAGTTTTTTATTATAATAAGAGTGGT 991 Query 196 ATTTCAACAACGACTCCACAACC-ACTAGCGTGGCCGCATCATAGTCTCCCACCTATCCT 254 ||||||| || || |||| |||||||| | | | | | |||| ||| || Sbjct 990 ATTTCAAGAATATCTAAACAATTTACTAGCGTAAAGGTCTAAACGATTACCACTTATACT 931 Query 255 ACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGT 313 ||||| | | ||| ||||| ||| | |||| ||||| | |||||||||| ||| Sbjct 930 ACACATATTAGATAAAATAACAATATAAAGATGTAGTAAAGGTTCACGGGGTCTTTCCGT 871 Query 314 CCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAG 373 | | ||| ||||||| || || | ||| ||||| | | || | | ||| Sbjct 870 CTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAG 811 Query 374 ACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCG 433 ||||| ||| |||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 810 ACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCG 751 Query 434 CTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCA 493 ||||||||||| || | |||||| ||||||||||||||| |||| ||| Sbjct 750 CTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGACTTCCATT---------- 701 Query 494 CACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTC 553 | || || || |||| |||| |||||||||||||||||| ||||| | Sbjct 700 ---------TAATGCGCAAACATCTCCTTTTAATCTTCCAGCACCGGGCAGGTGTCAGAC 650 Query 554 CGTATACCTC 563 | ||||| || Sbjct 649 CCTATACATC 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702309483392