Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq510 241 1e-58 seq126 226 2e-54 >seq510 Length=41021 Score = 241 bits (266), Expect = 1e-58 Identities = 1092/1698 (64%), Gaps = 75/1698 (4%) Strand=Plus/Minus Query 65123 TAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTT 65182 |||||||||||||||||||| || |||||| || || ||||| || | | | || Sbjct 21626 TAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACG-TCAGCTT 21568 Query 65183 GCATA-ATTCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACC 65241 | | | |||| ||||| | || || ||||||||||||||||| ||| ||| || Sbjct 21567 ACTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATATAAGCGCC 21508 Query 65242 ACGATCTGCAGCCATGTCAATGATACGACGTCCCGAT--ATCTCCCAGACGGTCTTGTAC 65299 ||| || || | || ||| | || || | | | | | |||||||| || ||||||||| Sbjct 21507 ACGGTCAGCCGACAGGTCCA-GA-ACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTAC 21450 Query 65300 AGGCGACGTACC-TCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGA-CGTGCAA 65357 | | || | ||| ||||| |||| | | ||| || || |||| | | | || Sbjct 21449 TT-CTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATTCAG 21391 Query 65358 TAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGT 65417 ||| ||||||| | | | ||| | || | |||||||| | | | || | Sbjct 21390 -AATCTGATTACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATCAGAT 21332 Query 65418 GACGATTGATGAC--TTG-GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACG 65474 || ||| | || | | |||||| || | || ||||||||| || |||||||||| Sbjct 21331 -AC--TTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGACG 21275 Query 65475 TGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGG 65534 || || || | || || ||||||| || || || || || || || || ||||||| Sbjct 21274 TGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGG 21215 Query 65535 GAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGC---AATTCGT 65591 | || |||| || ||||| || | |||| || |||| || | | | || Sbjct 21214 GTGCAACCAGCAGCGAGTTACGGAGACCGTG---TTTAATGACGTCATCTTTTAGTGCGG 21158 Query 65592 CCCAGTTCCACATCG--GTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGT 65649 |||||||||| | | | | | || ||| |||||| || || | | | Sbjct 21157 CCCAGTTCCAAAGCCCAGATGAAGGTGTG-----ACGCCCCACATGTCGAACTGGAAGAT 21103 Query 65650 TCCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTG 65709 || |||||||||| || || |||| | ||||| ||| ||| |||||| | Sbjct 21102 ACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAATCTC 21043 Query 65710 ACAGCTG-GTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCAC 65768 || | ||||| | || ||||| || || |||||||| ||| || | ||||| Sbjct 21042 -CATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCAC 20984 Query 65769 GTGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGA 65827 | || | ||||||| ||| | || ||| |||| || | || |||||||| || Sbjct 20983 GAGCTTGCGGGCTCTCGAACG-CGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGG 20925 Query 65828 ACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAG 65887 || |||||||| ||||||||||| |||| ||||| | ||||| | ||||| || Sbjct 20924 ACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCCTCTGCAACAGGATAA 20865 Query 65888 TAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGA-----TAC-GT 65941 || |||| ||||| | || | ||||| || | ||| | || | ||| || Sbjct 20864 TAGTTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGT 20805 Query 65942 CGCAATTGT--TCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACT 65999 | | |||| ||||| || | |||| |||||||| Sbjct 20804 CTC--TTGTAGTCGAA--CACACCGTTTT----------------------CCACAAACA 20771 Query 66000 TGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGA 66059 | || || || | ||| || | |||||| || || | ||| || || | || ||||| | Sbjct 20770 TAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCA 20711 Query 66060 CAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119 | |||| ||| | || ||| | || || || || || ||||| || || ||||| Sbjct 20710 TGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACC-AAGTTCTGCTGGTTCGACTTGC 20652 Query 66120 GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGA 66179 | || ||| |||||||| | |||| | || || ||||||| || | || | || Sbjct 20651 GGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGA 20592 Query 66180 TGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTAC-CGCCCTACCTTTGCGTTCGTAA 66238 | ||| ||| || | || || | || | ||| ||| | |||| ||||| Sbjct 20591 TAGCGAACCACAGCTGCTGAGCGTTGATTGT-CTTACGCGCACGTCCTTCCTTCTCGTAC 20533 Query 66239 TGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGT 66298 | ||| || || ||| || || ||| ||| || |||||| ||| | || Sbjct 20532 TTTTCATACAGAGCTTCAAACTCATCGCCCAGCACT-CGTACAGACCAGGAGCTTCGTTG 20474 Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358 ||||| | || ||| | |||| || || | ||| || |||||||| | | Sbjct 20473 GGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACC 20414 Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418 || || ||||| || | ||||| || || ||| |||| | ||||| || || |||| Sbjct 20413 CACAGCGCGTAAAACAAGTCGCG-GCGCGGTGCAGCTCATTACCGTGGTTCTTACGCAGA 20355 Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 || |||||||| || | |||||| ||||| || |||| |||||| |||||||||||| | Sbjct 20354 TCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTG 20295 Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538 || || || || || ||||| || |||||||| | ||| || ||||||||||| || Sbjct 20294 CGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACAT-GGG 20236 Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATC 66597 | | |||||||| ||| || |||||| ||| | | | | || || || || | Sbjct 20235 ATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGAT-GTAGCTGTTAGTGGCGCGGATGTT 20177 Query 66598 GTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGT 66657 ||| | | | | ||| ||||| || ||| || ||||| || || | | || Sbjct 20176 GTGCATACTGATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGT 20117 Query 66658 CCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTG 66717 | | ||||| ||||| |||||| ||| || | || ||| |||| ||| | || Sbjct 20116 GTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGAAGACAACTG 20057 Query 66718 GGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGA 66777 || || ||| |||| |||||| || || || |||||||| ||| | | | || Sbjct 20056 AGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAACTTCTGCGA 19997 Query 66778 CATGTAATTGTACGTCTC 66795 |||| | ||||||||| Sbjct 19996 CATGAGCTCGTACGTCTC 19979 >seq126 Length=136461 Score = 226 bits (250), Expect = 2e-54 Identities = 600/893 (67%), Gaps = 39/893 (4%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 |||||||| |||||||||| || | | || | |||| |||||||| || || || Sbjct 10296 CGTTTCGTGCTGTTCCCCATTCAGGAACACGAAGTGTGGCAGATGTACAAGAAAGCCGAG 10355 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGAT-TTGTCCAAAGACATGAATGACTGGGAGC- 61171 || ||||||||||||| |||||| |||| |||| || ||| | || |||||| ||| Sbjct 10356 GCCTCCTTCTGGACGGCTGAGGAGCTCGACCTTGTGCAC-GACCTCAAGGACTGG-AGCA 10413 Query 61172 -GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCG 61230 | | | || | || | ||| ||||| || || ||| | || ||||| || || Sbjct 10414 AGCTCACGGA-CAACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGT 10472 Query 61231 GACGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTC 61286 ||||||||||| || ||||| || || |||| ||| | || ||||| ||| | Sbjct 10473 GACGGTATCGTGAACGAGAACTTGGCCAT--GAAC--TTCAGCAACGAAGTGCAGGTGCC 10528 Query 61287 GGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTA 61346 ||||| ||||| ||||| ||||||||||| ||||| ||||| | ||||||||| | || Sbjct 10529 CGAGGCTCGTTGCTTCTATGGCTTCCAGATCGCCATTGAGAACATTCACTCGGAGGTCTA 10588 Query 61347 CAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCG-GAACGTGAACGAT-TGTTCAA 61403 | | ||||| || |||||||||| ||| ||| || ||| | || || | | Sbjct 10589 CTCACTGCTCATTGACACGTACATCAAGGACGCGATCGAGAA---GGACCATCTCCTGCG 10645 Query 61404 TGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-A 61462 |||||| ||||| || || || | | ||| || | ||||| |||| ||| | | Sbjct 10646 TGCCATTGAGACCATCCCTTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGA 10705 Query 61463 CC--AGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGT 61520 || || | | || | | || || ||||||| || || | || || || | Sbjct 10706 CCCGCGTGTATC--CT-CCTACCCGGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCAT 10762 Query 61521 ATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGG 61580 || ||| || || || | | ||||||||| | ||||| || || || |||||||| Sbjct 10763 CTTCTTCTCGGGCTCTTTCTGCTCCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGG 10822 Query 61581 TCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTG-CTG 61639 ||||| |||| || ||| | || || |||||||||||||| || || | ||| Sbjct 10823 TCTGAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCCTG 10882 Query 61640 --TTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGAT 61697 ||||| || || | | ||||| | | | | ||| ||||| ||||| Sbjct 10883 CCTTTTG-TACTC-----CAAGCTGGTCACCAAGCTGCCAGAGAGCCGTGTACACGAGAT 10936 Query 61698 TGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACT 61757 ||||||| || || || || || || ||| || |||| | | || || || Sbjct 10937 CATTCGTGACGCTGTGGTGATTGAGCACGAGTTTGTGCGTGACTCGCTCCCTGTGGAGCT 10996 Query 61758 CATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG-- 61815 || || ||||| | || || |||| ||||| ||||| || || || ||||||||| Sbjct 10997 GATTGGTATGAACTCTGCCCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCT 11056 Query 61816 TTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGAC 61875 | ||| || ||| || |||||| | | || ||||| ||||| | |||||| Sbjct 11057 CTACTCGCTT--GGTGTGTCCAAGATCTACCACGCTAAGAACCCTTTTGACTGGATGGAC 11114 Query 61876 ATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| || || | |||||||| || ||||||||||| ||||| ||||| || Sbjct 11115 ATGATCTCTCTCCAAGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTA 11167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397542237220880