Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001482985.1_202015-12- 29] 5,317 sequences; 71,413,976 total letters Query= NC_027197.1 Length=3753 Score E Sequences producing significant alignments: (Bits) Value seq886 113 1e-21 >seq886 Length=31841 Score = 113 bits (124), Expect = 1e-21 Identities = 200/292 (68%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 231 GTTGGCTCCATCACGATGGCCAAGTCCGACGGAAATCCAGCATTCGCTTCCGCAATCAAA 290 || || ||||| | |||| || ||||| ||||| || | ||||||||| |||| | Sbjct 7892 GTAGGTTCCATGAGAATGGTCAGATCCGAAGGAAAGCCGACGTTCGCTTCCAGGATCATA 7951 Query 291 TGATGAAACTCGTCATCTTCGAACGCACAGTACGGGGCCCAACGCGCACGGGCCTCCGCG 350 | | ||| || || | |||||||||| || ||||||| |||| ||||||||| Sbjct 7952 CGGTCAAAGTCAGGGTCCCCATACGCACAGTAAGGACCCCAACGAACACGCGCCTCCGCG 8011 Query 351 TTATTGATGAAATATTCCCTCGCGATCAGATCCATCATCTCAATCGCTGCATGCAAATCT 410 | || | ||| || | | || || |||||||||||| |||| || | | | || Sbjct 8012 TGGTTTACGAAGTACGCACGAGCAATGAGATCCATCATCCCAATGGCGGAGCGTAGCTCC 8071 Query 411 CGCAGCTCTTGCTGCATGCGACCGTTCAGTCCTCCCGCCATGTTGTACAACGTGTTCAGG 470 |||| ||| || | || ||||| | || || |||||||| |||| ||| || Sbjct 8072 CGCAACTCGGATTGTAAACGCCCGTTTAAGCCGCCAGCCATGTTTTACAGCGTCGAGAGA 8131 Query 471 CGAGTAAGGCGTAGACGCAACGCCTGCGCTTCGTTCAAGGCCGTACGTAGCT 522 || || | | | ||||||||| | |||||| || | |||||||| |||| Sbjct 8132 CGGGTCAACCTCAAACGCAACGCGTTCGCTTCATTAAGAGCCGTACGGAGCT 8183 Score = 82.4 bits (90), Expect = 2e-12 Identities = 73/88 (83%), Gaps = 5/88 (6%) Strand=Plus/Plus Query 2 TAGAGCTCGAGCTC--TGCCACCGCCGGG--TAAAACTAATAGAAAAGAAGTACAGCGCT 57 |||||||||||||| ||||||||||| | |||||| |||||||||||||||| ||||| Sbjct 7629 TAGAGCTCGAGCTCCATGCCACCGCCGTGACTAAAAC-AATAGAAAAGAAGTACGGCGCT 7687 Query 58 ACGCTTGTACCTTCTTTCACACTATTCA 85 ||||| |||||||||| | |||| Sbjct 7688 ACGCTGCCGTCTTCTTTCACCATCTTCA 7715 Score = 77.0 bits (84), Expect = 8e-11 Identities = 58/65 (89%), Gaps = 5/65 (8%) Strand=Plus/Minus Query 3692 AGCGTAGCGCTGTACTTCTTTTCTATTAGTTTTA--CCCGGCGGTGGCA--GAGCTCGAG 3747 |||||||||| |||||||||||||||| |||||| | ||||||||||| ||||||||| Sbjct 7692 AGCGTAGCGCCGTACTTCTTTTCTATT-GTTTTAGTCACGGCGGTGGCATGGAGCTCGAG 7634 Query 3748 CTCTA 3752 ||||| Sbjct 7633 CTCTA 7629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11896908098790