Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq3307 113 6e-23 seq3110 113 6e-23 seq2861 113 6e-23 seq1459 113 6e-23 seq702 113 6e-23 seq1742 109 8e-22 >seq3307 Length=10392 Score = 113 bits (124), Expect = 6e-23 Identities = 172/243 (71%), Gaps = 13/243 (5%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 5085 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 5027 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||| ||||||||||| ||| ||||| | || ||| ||| | | Sbjct 5026 AAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACC---------TCATTATTT 4976 Query 127 CGTTCACCAGCAGT-GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | | | | || || || |||||||||||| | ||||||||||| ||||| Sbjct 4975 TTTTTAATA--ATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCT 4918 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | | | ||||| | | | ||||||| | ||| |||| ||||||||||||||||| | Sbjct 4917 TCAATATAGTTCTCTCATTCACCTTAGTCTACTCGACCTATCCACCTGTGTCGGTTTAGG 4858 Query 246 GTA 248 ||| Sbjct 4857 GTA 4855 >seq3110 Length=8458 Score = 113 bits (124), Expect = 6e-23 Identities = 172/243 (71%), Gaps = 13/243 (5%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 1971 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 2029 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||| ||||||||||| ||| ||||| | || ||| ||| | | Sbjct 2030 AAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACC---------TCATTATTT 2080 Query 127 CGTTCACCAGCAGT-GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | | | | || || || |||||||||||| | ||||||||||| ||||| Sbjct 2081 TTTTTAATA--ATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCT 2138 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | | | ||||| | | | ||||||| | ||| |||| ||||||||||||||||| | Sbjct 2139 TCAATATAGTTCTCTCATTCACCTTAGTCTACTCGACCTATCCACCTGTGTCGGTTTAGG 2198 Query 246 GTA 248 ||| Sbjct 2199 GTA 2201 >seq2861 Length=8136 Score = 113 bits (124), Expect = 6e-23 Identities = 172/243 (71%), Gaps = 13/243 (5%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 814 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 872 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||| ||||||||||| ||| ||||| | || ||| ||| | | Sbjct 873 AAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACC---------TCATTATTT 923 Query 127 CGTTCACCAGCAGT-GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | | | | || || || |||||||||||| | ||||||||||| ||||| Sbjct 924 TTTTTAATA--ATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCT 981 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | | | ||||| | | | ||||||| | ||| |||| ||||||||||||||||| | Sbjct 982 TCAATATAGTTCTCTCATTCACCTTAGTCTACTCGACCTATCCACCTGTGTCGGTTTAGG 1041 Query 246 GTA 248 ||| Sbjct 1042 GTA 1044 Score = 113 bits (124), Expect = 6e-23 Identities = 172/243 (71%), Gaps = 13/243 (5%) Strand=Plus/Minus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 4163 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 4105 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||| ||||||||||| ||| ||||| | || ||| ||| | | Sbjct 4104 AAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACC---------TCATTATTT 4054 Query 127 CGTTCACCAGCAGT-GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | | | | || || || |||||||||||| | ||||||||||| ||||| Sbjct 4053 TTTTTAATA--ATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCT 3996 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | | | ||||| | | | ||||||| | ||| |||| ||||||||||||||||| | Sbjct 3995 TCAATATAGTTCTCTCATTCACCTTAGTCTACTCGACCTATCCACCTGTGTCGGTTTAGG 3936 Query 246 GTA 248 ||| Sbjct 3935 GTA 3933 >seq1459 Length=12523 Score = 113 bits (124), Expect = 6e-23 Identities = 172/243 (71%), Gaps = 13/243 (5%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 1631 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 1689 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||| ||||||||||| ||| ||||| | || ||| ||| | | Sbjct 1690 AAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACC---------TCATTATTT 1740 Query 127 CGTTCACCAGCAGT-GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | | | | || || || |||||||||||| | ||||||||||| ||||| Sbjct 1741 TTTTTAATA--ATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCT 1798 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | | | ||||| | | | ||||||| | ||| |||| ||||||||||||||||| | Sbjct 1799 TCAATATAGTTCTCTCATTCACCTTAGTCTACTCGACCTATCCACCTGTGTCGGTTTAGG 1858 Query 246 GTA 248 ||| Sbjct 1859 GTA 1861 >seq702 Length=10881 Score = 113 bits (124), Expect = 6e-23 Identities = 172/243 (71%), Gaps = 13/243 (5%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 8696 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 8754 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||| ||||||||||| ||| ||||| | || ||| ||| | | Sbjct 8755 AAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACC---------TCATTATTT 8805 Query 127 CGTTCACCAGCAGT-GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | | | | || || || |||||||||||| | ||||||||||| ||||| Sbjct 8806 TTTTTAATA--ATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCT 8863 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | | | ||||| | | | ||||||| | ||| |||| ||||||||||||||||| | Sbjct 8864 TCAATATAGTTCTCTCATTCACCTTAGTCTACTCGACCTATCCACCTGTGTCGGTTTAGG 8923 Query 246 GTA 248 ||| Sbjct 8924 GTA 8926 >seq1742 Length=13707 Score = 109 bits (120), Expect = 8e-22 Identities = 172/243 (71%), Gaps = 15/243 (6%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 |||||| ||||||||||| ||||| || |||||||| ||||| | || ||| | ||| Sbjct 639 CTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCAT-TTAGCAGAGTCCT 697 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||| ||||||||||| ||| ||||| | ||| | |||| | | Sbjct 698 AAGTTTTTATTAAACAGTCGCAACCCCCTATTTT----GAC-------ACCTCATTATTT 746 Query 127 CGTTCACCAGCAGT-GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || | | | | || || || |||||||||||| | ||||||||||| ||||| Sbjct 747 TTTTTAATA--ATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCT 804 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | | | ||||| | | | ||||||| | ||| |||| ||||||||||||||||| | Sbjct 805 TCAATATAGTTCTCTCATTCACCTTAGTCTACTCGACCTATCCACCTGTGTCGGTTTAGG 864 Query 246 GTA 248 ||| Sbjct 865 GTA 867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694358682766