Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq3307 78.8 9e-13 seq3110 78.8 9e-13 seq2861 78.8 9e-13 seq1742 78.8 9e-13 seq1459 78.8 9e-13 seq702 78.8 9e-13 >seq3307 Length=10392 Score = 78.8 bits (86), Expect = 9e-13 Identities = 69/86 (80%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 67 TGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTG 126 |||||||||||| ||||||| || ||||||| || | || || ||||||||| || Sbjct 5005 TGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGGTAACATGATGTATAGGGTCTG 5064 Query 127 ACGCCTGCCCGGTGCCGGAAGGTTAA 152 || |||||||||||| ||||| |||| Sbjct 5065 ACACCTGCCCGGTGCTGGAAGATTAA 5090 >seq3110 Length=8458 Score = 78.8 bits (86), Expect = 9e-13 Identities = 69/86 (80%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 67 TGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTG 126 |||||||||||| ||||||| || ||||||| || | || || ||||||||| || Sbjct 2051 TGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGGTAACATGATGTATAGGGTCTG 1992 Query 127 ACGCCTGCCCGGTGCCGGAAGGTTAA 152 || |||||||||||| ||||| |||| Sbjct 1991 ACACCTGCCCGGTGCTGGAAGATTAA 1966 >seq2861 Length=8136 Score = 78.8 bits (86), Expect = 9e-13 Identities = 69/86 (80%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 67 TGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTG 126 |||||||||||| ||||||| || ||||||| || | || || ||||||||| || Sbjct 894 TGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGGTAACATGATGTATAGGGTCTG 835 Query 127 ACGCCTGCCCGGTGCCGGAAGGTTAA 152 || |||||||||||| ||||| |||| Sbjct 834 ACACCTGCCCGGTGCTGGAAGATTAA 809 Score = 78.8 bits (86), Expect = 9e-13 Identities = 69/86 (80%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 67 TGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTG 126 |||||||||||| ||||||| || ||||||| || | || || ||||||||| || Sbjct 4083 TGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGGTAACATGATGTATAGGGTCTG 4142 Query 127 ACGCCTGCCCGGTGCCGGAAGGTTAA 152 || |||||||||||| ||||| |||| Sbjct 4143 ACACCTGCCCGGTGCTGGAAGATTAA 4168 >seq1742 Length=13707 Score = 78.8 bits (86), Expect = 9e-13 Identities = 69/86 (80%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 67 TGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTG 126 |||||||||||| ||||||| || ||||||| || | || || ||||||||| || Sbjct 719 TGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGGTAACATGATGTATAGGGTCTG 660 Query 127 ACGCCTGCCCGGTGCCGGAAGGTTAA 152 || |||||||||||| ||||| |||| Sbjct 659 ACACCTGCCCGGTGCTGGAAGATTAA 634 >seq1459 Length=12523 Score = 78.8 bits (86), Expect = 9e-13 Identities = 69/86 (80%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 67 TGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTG 126 |||||||||||| ||||||| || ||||||| || | || || ||||||||| || Sbjct 1711 TGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGGTAACATGATGTATAGGGTCTG 1652 Query 127 ACGCCTGCCCGGTGCCGGAAGGTTAA 152 || |||||||||||| ||||| |||| Sbjct 1651 ACACCTGCCCGGTGCTGGAAGATTAA 1626 >seq702 Length=10881 Score = 78.8 bits (86), Expect = 9e-13 Identities = 69/86 (80%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 67 TGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTG 126 |||||||||||| ||||||| || ||||||| || | || || ||||||||| || Sbjct 8776 TGCGACTGTTTAATAAAAACTTAGGACTCTGCTAAATGGTAACATGATGTATAGGGTCTG 8717 Query 127 ACGCCTGCCCGGTGCCGGAAGGTTAA 152 || |||||||||||| ||||| |||| Sbjct 8716 ACACCTGCCCGGTGCTGGAAGATTAA 8691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476771630102