Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq3307 242 8e-62 seq3110 242 8e-62 seq2861 242 8e-62 seq1459 242 8e-62 seq702 242 8e-62 seq1742 224 2e-56 >seq3307 Length=10392 Score = 242 bits (268), Expect = 8e-62 Identities = 273/369 (74%), Gaps = 20/369 (5%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | ||| ||||| |||||||| | ||||||| | | ||||| Sbjct 5263 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 5204 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| ||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 5203 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 5144 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 ||||||||||||||||||||||| || | | | | ||| | |||| ||| Sbjct 5143 GAGTTACGGCCGCCGTTTACTGGGACT---------TCCATTTAATGCGCAAACATCTCC 5093 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| |||||||||||||||||| ||||| |||||||||| | || | | ||||||| Sbjct 5092 TTTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAG 5033 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC-----------T 295 | ||| |||||| ||||||||||| |||||| | || || | Sbjct 5032 AGTCCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACCTCATTATTTTTT 4973 Query 296 GTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACA 355 | ||| ||| || || |||| ||||||| |||||||||||||||||||| | Sbjct 4972 TTAATAATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTTCAAT 4913 Query 356 ATAGTTCTC 364 ||||||||| Sbjct 4912 ATAGTTCTC 4904 >seq3110 Length=8458 Score = 242 bits (268), Expect = 8e-62 Identities = 273/369 (74%), Gaps = 20/369 (5%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | ||| ||||| |||||||| | ||||||| | | ||||| Sbjct 1793 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 1852 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| ||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1853 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 1912 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 ||||||||||||||||||||||| || | | | | ||| | |||| ||| Sbjct 1913 GAGTTACGGCCGCCGTTTACTGGGACT---------TCCATTTAATGCGCAAACATCTCC 1963 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| |||||||||||||||||| ||||| |||||||||| | || | | ||||||| Sbjct 1964 TTTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAG 2023 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC-----------T 295 | ||| |||||| ||||||||||| |||||| | || || | Sbjct 2024 AGTCCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACCTCATTATTTTTT 2083 Query 296 GTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACA 355 | ||| ||| || || |||| ||||||| |||||||||||||||||||| | Sbjct 2084 TTAATAATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTTCAAT 2143 Query 356 ATAGTTCTC 364 ||||||||| Sbjct 2144 ATAGTTCTC 2152 >seq2861 Length=8136 Score = 242 bits (268), Expect = 8e-62 Identities = 273/369 (74%), Gaps = 20/369 (5%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | ||| ||||| |||||||| | ||||||| | | ||||| Sbjct 636 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 695 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| ||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 696 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 755 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 ||||||||||||||||||||||| || | | | | ||| | |||| ||| Sbjct 756 GAGTTACGGCCGCCGTTTACTGGGACT---------TCCATTTAATGCGCAAACATCTCC 806 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| |||||||||||||||||| ||||| |||||||||| | || | | ||||||| Sbjct 807 TTTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAG 866 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC-----------T 295 | ||| |||||| ||||||||||| |||||| | || || | Sbjct 867 AGTCCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACCTCATTATTTTTT 926 Query 296 GTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACA 355 | ||| ||| || || |||| ||||||| |||||||||||||||||||| | Sbjct 927 TTAATAATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTTCAAT 986 Query 356 ATAGTTCTC 364 ||||||||| Sbjct 987 ATAGTTCTC 995 Score = 242 bits (268), Expect = 8e-62 Identities = 273/369 (74%), Gaps = 20/369 (5%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | ||| ||||| |||||||| | ||||||| | | ||||| Sbjct 4341 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 4282 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| ||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 4281 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 4222 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 ||||||||||||||||||||||| || | | | | ||| | |||| ||| Sbjct 4221 GAGTTACGGCCGCCGTTTACTGGGACT---------TCCATTTAATGCGCAAACATCTCC 4171 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| |||||||||||||||||| ||||| |||||||||| | || | | ||||||| Sbjct 4170 TTTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAG 4111 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC-----------T 295 | ||| |||||| ||||||||||| |||||| | || || | Sbjct 4110 AGTCCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACCTCATTATTTTTT 4051 Query 296 GTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACA 355 | ||| ||| || || |||| ||||||| |||||||||||||||||||| | Sbjct 4050 TTAATAATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTTCAAT 3991 Query 356 ATAGTTCTC 364 ||||||||| Sbjct 3990 ATAGTTCTC 3982 >seq1459 Length=12523 Score = 242 bits (268), Expect = 8e-62 Identities = 273/369 (74%), Gaps = 20/369 (5%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | ||| ||||| |||||||| | ||||||| | | ||||| Sbjct 1453 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 1512 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| ||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1513 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 1572 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 ||||||||||||||||||||||| || | | | | ||| | |||| ||| Sbjct 1573 GAGTTACGGCCGCCGTTTACTGGGACT---------TCCATTTAATGCGCAAACATCTCC 1623 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| |||||||||||||||||| ||||| |||||||||| | || | | ||||||| Sbjct 1624 TTTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAG 1683 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC-----------T 295 | ||| |||||| ||||||||||| |||||| | || || | Sbjct 1684 AGTCCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACCTCATTATTTTTT 1743 Query 296 GTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACA 355 | ||| ||| || || |||| ||||||| |||||||||||||||||||| | Sbjct 1744 TTAATAATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTTCAAT 1803 Query 356 ATAGTTCTC 364 ||||||||| Sbjct 1804 ATAGTTCTC 1812 >seq702 Length=10881 Score = 242 bits (268), Expect = 8e-62 Identities = 273/369 (74%), Gaps = 20/369 (5%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | ||| ||||| |||||||| | ||||||| | | ||||| Sbjct 8518 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 8577 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| ||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 8578 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 8637 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 ||||||||||||||||||||||| || | | | | ||| | |||| ||| Sbjct 8638 GAGTTACGGCCGCCGTTTACTGGGACT---------TCCATTTAATGCGCAAACATCTCC 8688 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| |||||||||||||||||| ||||| |||||||||| | || | | ||||||| Sbjct 8689 TTTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAG 8748 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC-----------T 295 | ||| |||||| ||||||||||| |||||| | || || | Sbjct 8749 AGTCCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGTGACACCTCATTATTTTTT 8808 Query 296 GTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACA 355 | ||| ||| || || |||| ||||||| |||||||||||||||||||| | Sbjct 8809 TTAATAATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTTCAAT 8868 Query 356 ATAGTTCTC 364 ||||||||| Sbjct 8869 ATAGTTCTC 8877 >seq1742 Length=13707 Score = 224 bits (248), Expect = 2e-56 Identities = 270/367 (74%), Gaps = 19/367 (5%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | ||| ||||| |||||||| | ||||||| | | ||||| Sbjct 462 GCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATGTCGTT 521 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| | | |||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 522 ACACCATTCAT-CAGGTCGGAACTTACCCGACAAGGGATTTCGCTACCTTAGGACCGTCA 580 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 ||||||||||||||||||||||| || | | | | ||| | |||| ||| Sbjct 581 GAGTTACGGCCGCCGTTTACTGGGACT---------TCCATTTAATGCGCAAACATCTCC 631 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||| |||||||||||||||||| ||||| |||||||||| | || | | ||||||| Sbjct 632 TTTTAATCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATGTTACCATTTAGCAG 691 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATT-------CTC--TGCGGCCTGT 297 | ||| |||||| ||||||||||| |||||| ||| | | | Sbjct 692 AGTCCTAAGTTTTTATTAAACAGTCGCAACCCCCTATTTTGACACCTCATTATTTTTTTT 751 Query 298 CATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAAT 357 ||| ||| || || |||| ||||||| |||||||||||||||||||| | || Sbjct 752 AATAATTAGGTACTTTTTATCCCGAAGTTACAAAGTCATTTTGCCGAGTTCCTTCAATAT 811 Query 358 AGTTCTC 364 ||||||| Sbjct 812 AGTTCTC 818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062334747392