Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq3307 111 3e-22 seq3110 111 3e-22 seq2861 111 3e-22 seq1459 111 3e-22 seq702 111 3e-22 seq1542 104 5e-20 seq1742 102 2e-19 >seq3307 Length=10392 Score = 111 bits (122), Expect = 3e-22 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC 186 || |||||||||||||||||| ||||| ||||||||||||||| | ||||| || ||| Sbjct 5456 GGTAGTTTGACTGGGGCGGTCACCTCCTAAAGAGTAACGGAGGTGTACAAAGGTAAGCTC 5515 Query 187 AGCTTGGATGGAA--ACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACAC 244 | |||||| | | || | | || || || ||||| || ||||||| | | Sbjct 5516 AAATTGGATAATAGTATCAATTGTAGAGCATAATGGTAAAAGCTTGCTTGACTGTAAGAT 5575 Query 245 CCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGG 304 || || | |||||||||||||||| | || ||||||| | || ||||| | Sbjct 5576 AGACATATCAAACAGGGACGAAAGTCGGTCATAGTGATCCGATAATTCTTTGTGGAAAGA 5635 Query 305 CCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| ||||||||||| ||| | ||||||| Sbjct 5636 TTATCGCTCAACGGATAAAAGGTACTCCGGGGATA 5670 >seq3110 Length=8458 Score = 111 bits (122), Expect = 3e-22 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC 186 || |||||||||||||||||| ||||| ||||||||||||||| | ||||| || ||| Sbjct 1600 GGTAGTTTGACTGGGGCGGTCACCTCCTAAAGAGTAACGGAGGTGTACAAAGGTAAGCTC 1541 Query 187 AGCTTGGATGGAA--ACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACAC 244 | |||||| | | || | | || || || ||||| || ||||||| | | Sbjct 1540 AAATTGGATAATAGTATCAATTGTAGAGCATAATGGTAAAAGCTTGCTTGACTGTAAGAT 1481 Query 245 CCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGG 304 || || | |||||||||||||||| | || ||||||| | || ||||| | Sbjct 1480 AGACATATCAAACAGGGACGAAAGTCGGTCATAGTGATCCGATAATTCTTTGTGGAAAGA 1421 Query 305 CCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| ||||||||||| ||| | ||||||| Sbjct 1420 TTATCGCTCAACGGATAAAAGGTACTCCGGGGATA 1386 >seq2861 Length=8136 Score = 111 bits (122), Expect = 3e-22 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC 186 || |||||||||||||||||| ||||| ||||||||||||||| | ||||| || ||| Sbjct 4534 GGTAGTTTGACTGGGGCGGTCACCTCCTAAAGAGTAACGGAGGTGTACAAAGGTAAGCTC 4593 Query 187 AGCTTGGATGGAA--ACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACAC 244 | |||||| | | || | | || || || ||||| || ||||||| | | Sbjct 4594 AAATTGGATAATAGTATCAATTGTAGAGCATAATGGTAAAAGCTTGCTTGACTGTAAGAT 4653 Query 245 CCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGG 304 || || | |||||||||||||||| | || ||||||| | || ||||| | Sbjct 4654 AGACATATCAAACAGGGACGAAAGTCGGTCATAGTGATCCGATAATTCTTTGTGGAAAGA 4713 Query 305 CCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| ||||||||||| ||| | ||||||| Sbjct 4714 TTATCGCTCAACGGATAAAAGGTACTCCGGGGATA 4748 Score = 105 bits (116), Expect = 1e-20 Identities = 153/215 (71%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC 186 || |||||||||||||||||| ||||| ||||||||||||||| | ||||| || ||| Sbjct 443 GGTAGTTTGACTGGGGCGGTCACCTCCTAAAGAGTAACGGAGGTGTACAAAGGTAAGCTC 384 Query 187 AGCTTGGATGGAA--ACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACAC 244 | |||||| | | || | | || || || ||||| || ||||||| | | Sbjct 383 AAATTGGATAATAGTATCAATTGTAGAGCATAATGGTAAAAGCTTGCTTGACTGTAAGAT 324 Query 245 CCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGG 304 || || | |||||||||||||||| | || ||||||| | || ||||| | Sbjct 323 AGACATATCAAACAGGGACGAAAGTCGGTCATAGTGATCCGATAATTCTTTGTGGAAAGA 264 Query 305 CCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| |||||| |||| ||| | ||||||| Sbjct 263 TTATCGCTCAACGGATGAAAGGTACTCCGGGGATA 229 >seq1459 Length=12523 Score = 111 bits (122), Expect = 3e-22 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC 186 || |||||||||||||||||| ||||| ||||||||||||||| | ||||| || ||| Sbjct 1260 GGTAGTTTGACTGGGGCGGTCACCTCCTAAAGAGTAACGGAGGTGTACAAAGGTAAGCTC 1201 Query 187 AGCTTGGATGGAA--ACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACAC 244 | |||||| | | || | | || || || ||||| || ||||||| | | Sbjct 1200 AAATTGGATAATAGTATCAATTGTAGAGCATAATGGTAAAAGCTTGCTTGACTGTAAGAT 1141 Query 245 CCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGG 304 || || | |||||||||||||||| | || ||||||| | || ||||| | Sbjct 1140 AGACATATCAAACAGGGACGAAAGTCGGTCATAGTGATCCGATAATTCTTTGTGGAAAGA 1081 Query 305 CCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| ||||||||||| ||| | ||||||| Sbjct 1080 TTATCGCTCAACGGATAAAAGGTACTCCGGGGATA 1046 >seq702 Length=10881 Score = 111 bits (122), Expect = 3e-22 Identities = 154/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC 186 || |||||||||||||||||| ||||| ||||||||||||||| | ||||| || ||| Sbjct 8325 GGTAGTTTGACTGGGGCGGTCACCTCCTAAAGAGTAACGGAGGTGTACAAAGGTAAGCTC 8266 Query 187 AGCTTGGATGGAA--ACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACAC 244 | |||||| | | || | | || || || ||||| || ||||||| | | Sbjct 8265 AAATTGGATAATAGTATCAATTGTAGAGCATAATGGTAAAAGCTTGCTTGACTGTAAGAT 8206 Query 245 CCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGG 304 || || | |||||||||||||||| | || ||||||| | || ||||| | Sbjct 8205 AGACATATCAAACAGGGACGAAAGTCGGTCATAGTGATCCGATAATTCTTTGTGGAAAGA 8146 Query 305 CCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| ||||||||||| ||| | ||||||| Sbjct 8145 TTATCGCTCAACGGATAAAAGGTACTCCGGGGATA 8111 >seq1542 Length=8130 Score = 104 bits (114), Expect = 5e-20 Identities = 154/216 (71%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC 186 || |||||||||||||||||| ||||| ||||||||||||||| | ||||| || ||| Sbjct 8020 GGTAGTTTGACTGGGGCGGTCACCTCCTAAAGAGTAACGGAGGTGTACAAAGGTAAGCTC 7961 Query 187 AGCTTGGATGGAA--ACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGAC-A 243 | |||||| | | || | | || || || ||||| || ||||||| | | Sbjct 7960 AAATTGGATAATAGTATCAATTGTAGAGCATAATGGTAAAAGCTTGCTTGACTGTAAGGA 7901 Query 244 CCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACG 303 || || | |||||||||||||||| | || ||||||| | || ||||| | Sbjct 7900 TAGACATATCAAACAGGGACGAAAGTCGGTCATAGTGATCCGATAATTCTTTGTGGAAAG 7841 Query 304 GCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| ||||||||||| ||| | ||||||| Sbjct 7840 ATTATCGCTCAACGGATAAAAGGTACTCCGGGGATA 7805 >seq1742 Length=13707 Score = 102 bits (112), Expect = 2e-19 Identities = 153/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 127 GGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTC 186 || |||||||||||| ||||| ||||| ||||||||||||||| | ||||| || ||| Sbjct 269 GGTAGTTTGACTGGG-CGGTCACCTCCTAAAGAGTAACGGAGGTGTACAAAGGTAAGCTC 211 Query 187 AGCTTGGATGGAA--ACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACAC 244 | |||||| | | || | | || || || ||||| || ||||||| | | Sbjct 210 AAATTGGATAATAGTATCAATTGTAGAGCATAATGGTAAAAGCTTGCTTGACTGTAAGAT 151 Query 245 CCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGG 304 || || | |||||||||||||||| | || ||||||| | || ||||| | Sbjct 150 AGACATATCAAACAGGGACGAAAGTCGGTCATAGTGATCCGATAATTCTTTGTGGAAAGA 91 Query 305 CCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||||| ||||||||||| ||| | ||||||| Sbjct 90 TTATCGCTCAACGGATAAAAGGTACTCCGGGGATA 56 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982339660992