Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq3307 122 1e-25 seq3110 122 1e-25 seq2861 122 1e-25 seq1459 122 1e-25 seq702 122 1e-25 seq1742 107 2e-21 >seq3307 Length=10392 Score = 122 bits (134), Expect = 1e-25 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | | |||| |||||||||| |||| | ||| ||||||| Sbjct 5294 CGGGGTCTTTCCGTCTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTG 5235 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | ||||||| |||||||||| ||||||||||||||||||| Sbjct 5234 AGTCTATATTGGAGACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCC 5175 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGT 171 ||||||||||||||||||||||||||||| Sbjct 5174 GACAAGGAATTTCGCTACCTTAGGACCGT 5146 >seq3110 Length=8458 Score = 122 bits (134), Expect = 1e-25 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | | |||| |||||||||| |||| | ||| ||||||| Sbjct 1762 CGGGGTCTTTCCGTCTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTG 1821 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | ||||||| |||||||||| ||||||||||||||||||| Sbjct 1822 AGTCTATATTGGAGACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCC 1881 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGT 171 ||||||||||||||||||||||||||||| Sbjct 1882 GACAAGGAATTTCGCTACCTTAGGACCGT 1910 >seq2861 Length=8136 Score = 122 bits (134), Expect = 1e-25 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | | |||| |||||||||| |||| | ||| ||||||| Sbjct 605 CGGGGTCTTTCCGTCTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTG 664 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | ||||||| |||||||||| ||||||||||||||||||| Sbjct 665 AGTCTATATTGGAGACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCC 724 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGT 171 ||||||||||||||||||||||||||||| Sbjct 725 GACAAGGAATTTCGCTACCTTAGGACCGT 753 Score = 122 bits (134), Expect = 1e-25 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | | |||| |||||||||| |||| | ||| ||||||| Sbjct 4372 CGGGGTCTTTCCGTCTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTG 4313 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | ||||||| |||||||||| ||||||||||||||||||| Sbjct 4312 AGTCTATATTGGAGACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCC 4253 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGT 171 ||||||||||||||||||||||||||||| Sbjct 4252 GACAAGGAATTTCGCTACCTTAGGACCGT 4224 >seq1459 Length=12523 Score = 122 bits (134), Expect = 1e-25 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | | |||| |||||||||| |||| | ||| ||||||| Sbjct 1422 CGGGGTCTTTCCGTCTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTG 1481 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | ||||||| |||||||||| ||||||||||||||||||| Sbjct 1482 AGTCTATATTGGAGACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCC 1541 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGT 171 ||||||||||||||||||||||||||||| Sbjct 1542 GACAAGGAATTTCGCTACCTTAGGACCGT 1570 >seq702 Length=10881 Score = 122 bits (134), Expect = 1e-25 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 |||||||||| |||| | | |||| |||||||||| |||| | ||| ||||||| Sbjct 8487 CGGGGTCTTTCCGTCTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTG 8546 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 || | | ||||||| |||||||||| ||||||||||||||||||| Sbjct 8547 AGTCTATATTGGAGACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCC 8606 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGT 171 ||||||||||||||||||||||||||||| Sbjct 8607 GACAAGGAATTTCGCTACCTTAGGACCGT 8635 >seq1742 Length=13707 Score = 107 bits (118), Expect = 2e-21 Identities = 96/123 (78%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 49 AATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNNNNN 108 |||| |||||||||| |||| | ||| ||||||||| | | ||||||| Sbjct 457 AATCCGCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAGACAGCGGGGATG 516 Query 109 NNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 168 |||||||||| | |||||||||||||||||||||||| |||||||||||||||||| Sbjct 517 TCGTTACACCATTCAT-CAGGTCGGAACTTACCCGACAAGGGATTTCGCTACCTTAGGAC 575 Query 169 CGT 171 ||| Sbjct 576 CGT 578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547167441258