Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq4083 122 2e-25 seq3307 122 2e-25 seq3148 122 2e-25 seq2861 122 2e-25 seq1731 122 2e-25 seq1542 122 2e-25 seq702 122 2e-25 seq116 122 2e-25 >seq4083 Length=11212 Score = 122 bits (134), Expect = 2e-25 Identities = 136/174 (78%), Gaps = 7/174 (4%) Strand=Plus/Plus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| ||| ||| |||| |||||||| |||||||| |||||||||| ||||||||||||| Sbjct 8725 TCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCT 8783 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 |||| | ||| ||| |||||||||||| ||| |||| |||||||| || ||| || Sbjct 8784 GCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAAC 8842 Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATT--ACCTCACCAACTAGC-TAATC 194 ||| || ||| | | |||||| || | || | || |||||||| | ||||| Sbjct 8843 CAGCTAAAGATAATAGGCTTGGT-AGTCTTTTAAACT-ACCAACTACCATAATC 8894 >seq3307 Length=10392 Score = 122 bits (134), Expect = 2e-25 Identities = 136/174 (78%), Gaps = 7/174 (4%) Strand=Plus/Minus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| ||| ||| |||| |||||||| |||||||| |||||||||| ||||||||||||| Sbjct 8548 TCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCT 8490 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 |||| | ||| ||| |||||||||||| ||| |||| |||||||| || ||| || Sbjct 8489 GCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAAC 8431 Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATT--ACCTCACCAACTAGC-TAATC 194 ||| || ||| | | |||||| || | || | || |||||||| | ||||| Sbjct 8430 CAGCTAAAGATAATAGGCTTGGT-AGTCTTTTAAACT-ACCAACTACCATAATC 8379 >seq3148 Length=3308 Score = 122 bits (134), Expect = 2e-25 Identities = 136/174 (78%), Gaps = 7/174 (4%) Strand=Plus/Minus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| ||| ||| |||| |||||||| |||||||| |||||||||| ||||||||||||| Sbjct 971 TCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCT 913 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 |||| | ||| ||| |||||||||||| ||| |||| |||||||| || ||| || Sbjct 912 GCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAAC 854 Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATT--ACCTCACCAACTAGC-TAATC 194 ||| || ||| | | |||||| || | || | || |||||||| | ||||| Sbjct 853 CAGCTAAAGATAATAGGCTTGGT-AGTCTTTTAAACT-ACCAACTACCATAATC 802 Score = 122 bits (134), Expect = 2e-25 Identities = 136/174 (78%), Gaps = 7/174 (4%) Strand=Plus/Plus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| ||| ||| |||| |||||||| |||||||| |||||||||| ||||||||||||| Sbjct 2340 TCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCT 2398 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 |||| | ||| ||| |||||||||||| ||| |||| |||||||| || ||| || Sbjct 2399 GCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAAC 2457 Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATT--ACCTCACCAACTAGC-TAATC 194 ||| || ||| | | |||||| || | || | || |||||||| | ||||| Sbjct 2458 CAGCTAAAGATAATAGGCTTGGT-AGTCTTTTAAACT-ACCAACTACCATAATC 2509 >seq2861 Length=8136 Score = 122 bits (134), Expect = 2e-25 Identities = 136/174 (78%), Gaps = 7/174 (4%) Strand=Plus/Minus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| ||| ||| |||| |||||||| |||||||| |||||||||| ||||||||||||| Sbjct 7626 TCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCT 7568 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 |||| | ||| ||| |||||||||||| ||| |||| |||||||| || ||| || Sbjct 7567 GCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAAC 7509 Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATT--ACCTCACCAACTAGC-TAATC 194 ||| || ||| | | |||||| || | || | || |||||||| | ||||| Sbjct 7508 CAGCTAAAGATAATAGGCTTGGT-AGTCTTTTAAACT-ACCAACTACCATAATC 7457 >seq1731 Length=9262 Score = 122 bits (134), Expect = 2e-25 Identities = 136/174 (78%), Gaps = 7/174 (4%) Strand=Plus/Plus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| ||| ||| |||| |||||||| |||||||| |||||||||| ||||||||||||| Sbjct 6405 TCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCT 6463 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 |||| | ||| ||| |||||||||||| ||| |||| |||||||| || ||| || Sbjct 6464 GCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAAC 6522 Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATT--ACCTCACCAACTAGC-TAATC 194 ||| || ||| | | |||||| || | || | || |||||||| | ||||| Sbjct 6523 CAGCTAAAGATAATAGGCTTGGT-AGTCTTTTAAACT-ACCAACTACCATAATC 6574 >seq1542 Length=8130 Score = 122 bits (134), Expect = 2e-25 Identities = 136/174 (78%), Gaps = 7/174 (4%) Strand=Plus/Minus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| ||| ||| |||| |||||||| |||||||| |||||||||| ||||||||||||| Sbjct 2879 TCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCT 2821 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 |||| | ||| ||| |||||||||||| ||| |||| |||||||| || ||| || Sbjct 2820 GCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAAC 2762 Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATT--ACCTCACCAACTAGC-TAATC 194 ||| || ||| | | |||||| || | || | || |||||||| | ||||| Sbjct 2761 CAGCTAAAGATAATAGGCTTGGT-AGTCTTTTAAACT-ACCAACTACCATAATC 2710 Score = 122 bits (134), Expect = 2e-25 Identities = 136/174 (78%), Gaps = 7/174 (4%) Strand=Plus/Plus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| ||| ||| |||| |||||||| |||||||| |||||||||| ||||||||||||| Sbjct 4925 TCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCT 4983 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 |||| | ||| ||| |||||||||||| ||| |||| |||||||| || ||| || Sbjct 4984 GCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAAC 5042 Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATT--ACCTCACCAACTAGC-TAATC 194 ||| || ||| | | |||||| || | || | || |||||||| | ||||| Sbjct 5043 CAGCTAAAGATAATAGGCTTGGT-AGTCTTTTAAACT-ACCAACTACCATAATC 5094 >seq702 Length=10881 Score = 122 bits (134), Expect = 2e-25 Identities = 136/174 (78%), Gaps = 7/174 (4%) Strand=Plus/Plus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| ||| ||| |||| |||||||| |||||||| |||||||||| ||||||||||||| Sbjct 5233 TCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCT 5291 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 |||| | ||| ||| |||||||||||| ||| |||| |||||||| || ||| || Sbjct 5292 GCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAAC 5350 Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATT--ACCTCACCAACTAGC-TAATC 194 ||| || ||| | | |||||| || | || | || |||||||| | ||||| Sbjct 5351 CAGCTAAAGATAATAGGCTTGGT-AGTCTTTTAAACT-ACCAACTACCATAATC 5402 >seq116 Length=10949 Score = 122 bits (134), Expect = 2e-25 Identities = 136/174 (78%), Gaps = 7/174 (4%) Strand=Plus/Minus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCT 83 |||| ||| ||| |||| |||||||| |||||||| |||||||||| ||||||||||||| Sbjct 559 TCACTCACTCGGTATTG-CTGGATCAAGCTTTCGCTCATTGTCCAAAATTCCCCACTGCT 501 Query 84 GCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGAC 143 |||| | ||| ||| |||||||||||| ||| |||| |||||||| || ||| || Sbjct 500 GCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTTTCAAAC 442 Query 144 CAGTTACGGATCGTCGCCTTGGTGAGCCATT--ACCTCACCAACTAGC-TAATC 194 ||| || ||| | | |||||| || | || | || |||||||| | ||||| Sbjct 441 CAGCTAAAGATAATAGGCTTGGT-AGTCTTTTAAACT-ACCAACTACCATAATC 390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071934157760