Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq3307 127 7e-27 seq3110 127 7e-27 seq2861 127 7e-27 seq1742 127 7e-27 seq1459 127 7e-27 seq702 127 7e-27 >seq3307 Length=10392 Score = 127 bits (140), Expect = 7e-27 Identities = 180/252 (71%), Gaps = 1/252 (0%) Strand=Plus/Minus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTAC 115 ||||||||||| || || ||||| || | ||||||||| || |||||||||| Sbjct 4307 ATTCGGAGTTTCCAAGAATTTAGTAAGTTTTTACGCCCCCTAGCTCAATGAGTGCTCTAC 4248 Query 116 CTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCAC 175 | || || | | | ||| || | ||| |||||| ||| ||||||||||| | Sbjct 4247 C-CCAAAAAAAGATTTTAAATGCTCTACTTCAATAGATTTCGCGGAAAACCAGCTATCTC 4189 Query 176 GAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGT 235 ||||||||| ||||||||| |||| ||||| ||||| || | ||| | || || || Sbjct 4188 TGAGTTTGATTAGCCTTTCACTCCTAACCACAAATCATCTCCATATTTTGCCACATATGT 4129 Query 236 GGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTC 295 | ||||| ||||||| || ||||| ||||| ||| ||||| ||||||||| Sbjct 4128 GAGTTCGATCCTCCAAATAGTTTTACCTATTTTTCAATCTGTTCATGGTTAGATCACTCA 4069 Query 296 GCTTCGGGTCTT 307 | |||||||||| Sbjct 4068 GTTTCGGGTCTT 4057 >seq3110 Length=8458 Score = 127 bits (140), Expect = 7e-27 Identities = 180/252 (71%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTAC 115 ||||||||||| || || ||||| || | ||||||||| || |||||||||| Sbjct 2749 ATTCGGAGTTTCCAAGAATTTAGTAAGTTTTTACGCCCCCTAGCTCAATGAGTGCTCTAC 2808 Query 116 CTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCAC 175 | || || | | | ||| || | ||| |||||| ||| ||||||||||| | Sbjct 2809 C-CCAAAAAAAGATTTTAAATGCTCTACTTCAATAGATTTCGCGGAAAACCAGCTATCTC 2867 Query 176 GAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGT 235 ||||||||| ||||||||| |||| ||||| ||||| || | ||| | || || || Sbjct 2868 TGAGTTTGATTAGCCTTTCACTCCTAACCACAAATCATCTCCATATTTTGCCACATATGT 2927 Query 236 GGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTC 295 | ||||| ||||||| || ||||| ||||| ||| ||||| ||||||||| Sbjct 2928 GAGTTCGATCCTCCAAATAGTTTTACCTATTTTTCAATCTGTTCATGGTTAGATCACTCA 2987 Query 296 GCTTCGGGTCTT 307 | |||||||||| Sbjct 2988 GTTTCGGGTCTT 2999 >seq2861 Length=8136 Score = 127 bits (140), Expect = 7e-27 Identities = 180/252 (71%), Gaps = 1/252 (0%) Strand=Plus/Minus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTAC 115 ||||||||||| || || ||||| || | ||||||||| || |||||||||| Sbjct 3385 ATTCGGAGTTTCCAAGAATTTAGTAAGTTTTTACGCCCCCTAGCTCAATGAGTGCTCTAC 3326 Query 116 CTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCAC 175 | || || | | | ||| || | ||| |||||| ||| ||||||||||| | Sbjct 3325 C-CCAAAAAAAGATTTTAAATGCTCTACTTCAATAGATTTCGCGGAAAACCAGCTATCTC 3267 Query 176 GAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGT 235 ||||||||| ||||||||| |||| ||||| ||||| || | ||| | || || || Sbjct 3266 TGAGTTTGATTAGCCTTTCACTCCTAACCACAAATCATCTCCATATTTTGCCACATATGT 3207 Query 236 GGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTC 295 | ||||| ||||||| || ||||| ||||| ||| ||||| ||||||||| Sbjct 3206 GAGTTCGATCCTCCAAATAGTTTTACCTATTTTTCAATCTGTTCATGGTTAGATCACTCA 3147 Query 296 GCTTCGGGTCTT 307 | |||||||||| Sbjct 3146 GTTTCGGGTCTT 3135 Score = 123 bits (136), Expect = 9e-26 Identities = 179/252 (71%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTAC 115 ||||||||||| || || ||||| || | ||||||||| || ||||||||| Sbjct 1592 ATTCGGAGTTTCCAAGAATTTAGTAAGTTTTTACGCCCCCTAGCTCAATGNGTGCTCTAC 1651 Query 116 CTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCAC 175 | || || | | | ||| || | ||| |||||| ||| ||||||||||| | Sbjct 1652 C-CCAAAAAAAGATTTTAAATGCTCTACTTCAATAGATTTCGCGGAAAACCAGCTATCTC 1710 Query 176 GAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGT 235 ||||||||| ||||||||| |||| ||||| ||||| || | ||| | || || || Sbjct 1711 TGAGTTTGATTAGCCTTTCACTCCTAACCACAAATCATCTCCATATTTTGCCACATATGT 1770 Query 236 GGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTC 295 | ||||| ||||||| || ||||| ||||| ||| ||||| ||||||||| Sbjct 1771 GAGTTCGATCCTCCAAATAGTTTTACCTATTTTTCAATCTGTTCATGGTTAGATCACTCA 1830 Query 296 GCTTCGGGTCTT 307 | |||||||||| Sbjct 1831 GTTTCGGGTCTT 1842 >seq1742 Length=13707 Score = 127 bits (140), Expect = 7e-27 Identities = 180/252 (71%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTAC 115 ||||||||||| || || ||||| || | ||||||||| || |||||||||| Sbjct 1415 ATTCGGAGTTTCCAAGAATTTAGTAAGTTTTTACGCCCCCTAGCTCAATGAGTGCTCTAC 1474 Query 116 CTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCAC 175 | || || | | | ||| || | ||| |||||| ||| ||||||||||| | Sbjct 1475 C-CCAAAAAAAGATTTTAAATGCTCTACTTCAATAGATTTCGCGGAAAACCAGCTATCTC 1533 Query 176 GAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGT 235 ||||||||| ||||||||| |||| ||||| ||||| || | ||| | || || || Sbjct 1534 TGAGTTTGATTAGCCTTTCACTCCTAACCACAAATCATCTCCATATTTTGCCACATATGT 1593 Query 236 GGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTC 295 | ||||| ||||||| || ||||| ||||| ||| ||||| ||||||||| Sbjct 1594 GAGTTCGATCCTCCAAATAGTTTTACCTATCTTTCAATCTGTTCATGGTTAGATCACTCA 1653 Query 296 GCTTCGGGTCTT 307 | |||||||||| Sbjct 1654 GTTTCGGGTCTT 1665 >seq1459 Length=12523 Score = 127 bits (140), Expect = 7e-27 Identities = 180/252 (71%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTAC 115 ||||||||||| || || ||||| || | ||||||||| || |||||||||| Sbjct 2409 ATTCGGAGTTTCCAAGAATTTAGTAAGTTTTTACGCCCCCTAGCTCAATGAGTGCTCTAC 2468 Query 116 CTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCAC 175 | || || | | | ||| || | ||| |||||| ||| ||||||||||| | Sbjct 2469 C-CCAAAAAAAGATTTTAAATGCTCTACTTCAATAGATTTCGCGGAAAACCAGCTATCTC 2527 Query 176 GAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGT 235 ||||||||| ||||||||| |||| ||||| ||||| || | ||| | || || || Sbjct 2528 TGAGTTTGATTAGCCTTTCACTCCTAACCACAAATCATCTCCATATTTTGCCACATATGT 2587 Query 236 GGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTC 295 | ||||| ||||||| || ||||| ||||| ||| ||||| ||||||||| Sbjct 2588 GAGTTCGATCCTCCAAATAGTTTTACCTATTTTTCAATCTGTTCATGGTTAGATCACTCA 2647 Query 296 GCTTCGGGTCTT 307 | |||||||||| Sbjct 2648 GTTTCGGGTCTT 2659 >seq702 Length=10881 Score = 127 bits (140), Expect = 7e-27 Identities = 180/252 (71%), Gaps = 1/252 (0%) Strand=Plus/Plus Query 56 ATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACCATCCAGTGCTCTAC 115 ||||||||||| || || ||||| || | ||||||||| || |||||||||| Sbjct 9474 ATTCGGAGTTTCCAAGAATTTAGTAAGTTTTTACGCCCCCTAGCTCAATGAGTGCTCTAC 9533 Query 116 CTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCAC 175 | || || | | | ||| || | ||| |||||| ||| ||||||||||| | Sbjct 9534 C-CCAAAAAAAGATTTTAAATGCTCTACTTCAATAGATTTCGCGGAAAACCAGCTATCTC 9592 Query 176 GAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGT 235 ||||||||| ||||||||| |||| ||||| ||||| || | ||| | || || || Sbjct 9593 TGAGTTTGATTAGCCTTTCACTCCTAACCACAAATCATCTCCATATTTTGCCACATATGT 9652 Query 236 GGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTC 295 | ||||| ||||||| || ||||| ||||| ||| ||||| ||||||||| Sbjct 9653 GAGTTCGATCCTCCAAATAGTTTTACCTATTTTTCAATCTGTTCATGGTTAGATCACTCA 9712 Query 296 GCTTCGGGTCTT 307 | |||||||||| Sbjct 9713 GTTTCGGGTCTT 9724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817488363008