Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq3307 127 5e-27 seq3110 127 5e-27 seq2861 127 5e-27 seq1742 127 5e-27 seq1459 127 5e-27 seq702 127 5e-27 >seq3307 Length=10392 Score = 127 bits (140), Expect = 5e-27 Identities = 144/189 (76%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAG 271 ||||||| || |||||| | || |||||| | ||||| || ||| ||||| |||| Sbjct 4548 GCTTCGGTAAATTTCTTAAGTCTCGATACATTTTAGGCGCAAAAAAACTAGACCAATGAG 4489 Query 272 CTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAA 331 ||||||||| ||||| ||||||||||||||||||||| |||| |||||||| | Sbjct 4488 CTATTACGCTTTCTTTAAAGGATGGCTGCTTCCAAGCCTACCTACTGGTTGTAATCATTT 4429 Query 332 CTCCACATCCTTTCCCACTGAG-TCACCACTTAGGGGCCTTAGCTGAT-GATCTGGGCTG 389 | ||| |||||| |||| || | | |||| | ||||||| ||| |||||||||| Sbjct 4428 TTTCACTTCCTTTTTCACTTAGAATATTATTTAGAGACCTTAGC-GATCAATCTGGGCTG 4370 Query 390 TTTCCCTCT 398 ||||||||| Sbjct 4369 TTTCCCTCT 4361 >seq3110 Length=8458 Score = 127 bits (140), Expect = 5e-27 Identities = 144/189 (76%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAG 271 ||||||| || |||||| | || |||||| | ||||| || ||| ||||| |||| Sbjct 2508 GCTTCGGTAAATTTCTTAAGTCTCGATACATTTTAGGCGCAAAAAAACTAGACCAATGAG 2567 Query 272 CTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAA 331 ||||||||| ||||| ||||||||||||||||||||| |||| |||||||| | Sbjct 2568 CTATTACGCTTTCTTTAAAGGATGGCTGCTTCCAAGCCTACCTACTGGTTGTAATCATTT 2627 Query 332 CTCCACATCCTTTCCCACTGAG-TCACCACTTAGGGGCCTTAGCTGAT-GATCTGGGCTG 389 | ||| |||||| |||| || | | |||| | ||||||| ||| |||||||||| Sbjct 2628 TTTCACTTCCTTTTTCACTTAGAATATTATTTAGAGACCTTAGC-GATCAATCTGGGCTG 2686 Query 390 TTTCCCTCT 398 ||||||||| Sbjct 2687 TTTCCCTCT 2695 >seq2861 Length=8136 Score = 127 bits (140), Expect = 5e-27 Identities = 144/189 (76%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAG 271 ||||||| || |||||| | || |||||| | ||||| || ||| ||||| |||| Sbjct 1351 GCTTCGGTAAATTTCTTAAGTCTCGATACATTTTAGGCGCAAAAAAACTAGACCAATGAG 1410 Query 272 CTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAA 331 ||||||||| ||||| ||||||||||||||||||||| |||| |||||||| | Sbjct 1411 CTATTACGCTTTCTTTAAAGGATGGCTGCTTCCAAGCCTACCTACTGGTTGTAATCATTT 1470 Query 332 CTCCACATCCTTTCCCACTGAG-TCACCACTTAGGGGCCTTAGCTGAT-GATCTGGGCTG 389 | ||| |||||| |||| || | | |||| | ||||||| ||| |||||||||| Sbjct 1471 TTTCACTTCCTTTTTCACTTAGAATATTATTTAGAGACCTTAGC-GATCAATCTGGGCTG 1529 Query 390 TTTCCCTCT 398 ||||||||| Sbjct 1530 TTTCCCTCT 1538 Score = 127 bits (140), Expect = 5e-27 Identities = 144/189 (76%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAG 271 ||||||| || |||||| | || |||||| | ||||| || ||| ||||| |||| Sbjct 3626 GCTTCGGTAAATTTCTTAAGTCTCGATACATTTTAGGCGCAAAAAAACTAGACCAATGAG 3567 Query 272 CTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAA 331 ||||||||| ||||| ||||||||||||||||||||| |||| |||||||| | Sbjct 3566 CTATTACGCTTTCTTTAAAGGATGGCTGCTTCCAAGCCTACCTACTGGTTGTAATCATTT 3507 Query 332 CTCCACATCCTTTCCCACTGAG-TCACCACTTAGGGGCCTTAGCTGAT-GATCTGGGCTG 389 | ||| |||||| |||| || | | |||| | ||||||| ||| |||||||||| Sbjct 3506 TTTCACTTCCTTTTTCACTTAGAATATTATTTAGAGACCTTAGC-GATCAATCTGGGCTG 3448 Query 390 TTTCCCTCT 398 ||||||||| Sbjct 3447 TTTCCCTCT 3439 >seq1742 Length=13707 Score = 127 bits (140), Expect = 5e-27 Identities = 144/189 (76%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAG 271 ||||||| || |||||| | || |||||| | ||||| || ||| ||||| |||| Sbjct 1174 GCTTCGGTAAATTTCTTAAGTCTCGATACATTTTAGGCGCAAAAAAACTAGACCAATGAG 1233 Query 272 CTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAA 331 ||||||||| ||||| ||||||||||||||||||||| |||| |||||||| | Sbjct 1234 CTATTACGCTTTCTTTAAAGGATGGCTGCTTCCAAGCCTACCTACTGGTTGTAATCATTT 1293 Query 332 CTCCACATCCTTTCCCACTGAG-TCACCACTTAGGGGCCTTAGCTGAT-GATCTGGGCTG 389 | ||| |||||| |||| || | | |||| | ||||||| ||| |||||||||| Sbjct 1294 TTTCACTTCCTTTTTCACTTAGAATATTATTTAGAGACCTTAGC-GATCAATCTGGGCTG 1352 Query 390 TTTCCCTCT 398 ||||||||| Sbjct 1353 TTTCCCTCT 1361 >seq1459 Length=12523 Score = 127 bits (140), Expect = 5e-27 Identities = 144/189 (76%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAG 271 ||||||| || |||||| | || |||||| | ||||| || ||| ||||| |||| Sbjct 2168 GCTTCGGTAAATTTCTTAAGTCTCGATACATTTTAGGCGCAAAAAAACTAGACCAATGAG 2227 Query 272 CTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAA 331 ||||||||| ||||| ||||||||||||||||||||| |||| |||||||| | Sbjct 2228 CTATTACGCTTTCTTTAAAGGATGGCTGCTTCCAAGCCTACCTACTGGTTGTAATCATTT 2287 Query 332 CTCCACATCCTTTCCCACTGAG-TCACCACTTAGGGGCCTTAGCTGAT-GATCTGGGCTG 389 | ||| |||||| |||| || | | |||| | ||||||| ||| |||||||||| Sbjct 2288 TTTCACTTCCTTTTTCACTTAGAATATTATTTAGAGACCTTAGC-GATCAATCTGGGCTG 2346 Query 390 TTTCCCTCT 398 ||||||||| Sbjct 2347 TTTCCCTCT 2355 >seq702 Length=10881 Score = 127 bits (140), Expect = 5e-27 Identities = 144/189 (76%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAG 271 ||||||| || |||||| | || |||||| | ||||| || ||| ||||| |||| Sbjct 9233 GCTTCGGTAAATTTCTTAAGTCTCGATACATTTTAGGCGCAAAAAAACTAGACCAATGAG 9292 Query 272 CTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAA 331 ||||||||| ||||| ||||||||||||||||||||| |||| |||||||| | Sbjct 9293 CTATTACGCTTTCTTTAAAGGATGGCTGCTTCCAAGCCTACCTACTGGTTGTAATCATTT 9352 Query 332 CTCCACATCCTTTCCCACTGAG-TCACCACTTAGGGGCCTTAGCTGAT-GATCTGGGCTG 389 | ||| |||||| |||| || | | |||| | ||||||| ||| |||||||||| Sbjct 9353 TTTCACTTCCTTTTTCACTTAGAATATTATTTAGAGACCTTAGC-GATCAATCTGGGCTG 9411 Query 390 TTTCCCTCT 398 ||||||||| Sbjct 9412 TTTCCCTCT 9420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177527671808