Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq3307 163 4e-38 seq3110 163 4e-38 seq1459 163 4e-38 seq702 163 4e-38 seq2861 159 5e-37 seq1542 158 2e-36 seq1731 154 2e-35 >seq3307 Length=10392 Score = 163 bits (180), Expect = 4e-38 Identities = 193/260 (74%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 ||||||||| ||||| |||||| ||| |||||| | | || |||| || Sbjct 5976 CTTAGATGCTTTCAGTAATTATCCAAAATAAATTTAGCTACTCGGCGATGCCTTTTA--- 5920 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||| | | |||||||| ||| || || |||||||||||||||| | || | || Sbjct 5919 -ACAACCGATACACCAGAGATTTACCCTTCTCGGTCCTCTCGTACTAGAGTTAGATTCTT 5861 Query 137 TCAAATTTCCTACGCCCACGACG-GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||| |||| | | | |||||| ||| ||||||||| ||||||||| ||||| Sbjct 5860 TCATTTTTCAAAATATCTATAGAAGATAGGAACCAAACTGTCTCACGACGTTCTAAACCC 5801 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 | ||| ||| || ||||||| ||||||||||| ||||||||| |||| ||||||| |||| Sbjct 5800 AACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGAACCTTCTTCAGCTCCAG 5741 Query 256 GATGAGACGAGCCGACATCG 275 |||| || ||| |||||||| Sbjct 5740 GATGTGATGAGTCGACATCG 5721 >seq3110 Length=8458 Score = 163 bits (180), Expect = 4e-38 Identities = 193/260 (74%), Gaps = 5/260 (2%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 ||||||||| ||||| |||||| ||| |||||| | | || |||| || Sbjct 1080 CTTAGATGCTTTCAGTAATTATCCAAAATAAATTTAGCTACTCGGCGATGCCTTTTA--- 1136 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||| | | |||||||| ||| || || |||||||||||||||| | || | || Sbjct 1137 -ACAACCGATACACCAGAGATTTACCCTTCTCGGTCCTCTCGTACTAGAGTTAGATTCTT 1195 Query 137 TCAAATTTCCTACGCCCACGACG-GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||| |||| | | | |||||| ||| ||||||||| ||||||||| ||||| Sbjct 1196 TCATTTTTCAAAATATCTATAGAAGATAGGAACCAAACTGTCTCACGACGTTCTAAACCC 1255 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 | ||| ||| || ||||||| ||||||||||| ||||||||| |||| ||||||| |||| Sbjct 1256 AACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGAACCTTCTTCAGCTCCAG 1315 Query 256 GATGAGACGAGCCGACATCG 275 |||| || ||| |||||||| Sbjct 1316 GATGTGATGAGTCGACATCG 1335 >seq1459 Length=12523 Score = 163 bits (180), Expect = 4e-38 Identities = 193/260 (74%), Gaps = 5/260 (2%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 ||||||||| ||||| |||||| ||| |||||| | | || |||| || Sbjct 740 CTTAGATGCTTTCAGTAATTATCCAAAATAAATTTAGCTACTCGGCGATGCCTTTTA--- 796 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||| | | |||||||| ||| || || |||||||||||||||| | || | || Sbjct 797 -ACAACCGATACACCAGAGATTTACCCTTCTCGGTCCTCTCGTACTAGAGTTAGATTCTT 855 Query 137 TCAAATTTCCTACGCCCACGACG-GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||| |||| | | | |||||| ||| ||||||||| ||||||||| ||||| Sbjct 856 TCATTTTTCAAAATATCTATAGAAGATAGGAACCAAACTGTCTCACGACGTTCTAAACCC 915 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 | ||| ||| || ||||||| ||||||||||| ||||||||| |||| ||||||| |||| Sbjct 916 AACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGAACCTTCTTCAGCTCCAG 975 Query 256 GATGAGACGAGCCGACATCG 275 |||| || ||| |||||||| Sbjct 976 GATGTGATGAGTCGACATCG 995 >seq702 Length=10881 Score = 163 bits (180), Expect = 4e-38 Identities = 193/260 (74%), Gaps = 5/260 (2%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 ||||||||| ||||| |||||| ||| |||||| | | || |||| || Sbjct 7805 CTTAGATGCTTTCAGTAATTATCCAAAATAAATTTAGCTACTCGGCGATGCCTTTTA--- 7861 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||| | | |||||||| ||| || || |||||||||||||||| | || | || Sbjct 7862 -ACAACCGATACACCAGAGATTTACCCTTCTCGGTCCTCTCGTACTAGAGTTAGATTCTT 7920 Query 137 TCAAATTTCCTACGCCCACGACG-GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||| |||| | | | |||||| ||| ||||||||| ||||||||| ||||| Sbjct 7921 TCATTTTTCAAAATATCTATAGAAGATAGGAACCAAACTGTCTCACGACGTTCTAAACCC 7980 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 | ||| ||| || ||||||| ||||||||||| ||||||||| |||| ||||||| |||| Sbjct 7981 AACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGAACCTTCTTCAGCTCCAG 8040 Query 256 GATGAGACGAGCCGACATCG 275 |||| || ||| |||||||| Sbjct 8041 GATGTGATGAGTCGACATCG 8060 >seq2861 Length=8136 Score = 159 bits (176), Expect = 5e-37 Identities = 192/260 (74%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 ||||||||| ||||| |||||| ||| |||||| | | || |||| || Sbjct 5054 CTTAGATGCTTTCAGTAATTATCCAAAATAAATTTAGCTACTCGGCGATGCCTTTTA--- 4998 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||| | | |||||||| ||| || || |||||||||||||||| | || | || Sbjct 4997 -ACAACCGATACACCAGAGATTTACCCTTCTCGGTCCTCTCGTACTAGAGTTAGATTCTT 4939 Query 137 TCAAATTTCCTACGCCCACGACG-GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||| |||| | | | |||||| ||| ||| ||||| ||||||||| ||||| Sbjct 4938 TCATTTTTCAAAATATCTATAGAAGATAGGAACCAAACNGTCTCACGACGTTCTAAACCC 4879 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 | ||| ||| || ||||||| ||||||||||| ||||||||| |||| ||||||| |||| Sbjct 4878 AACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGAACCTTCTTCAGCTCCAG 4819 Query 256 GATGAGACGAGCCGACATCG 275 |||| || ||| |||||||| Sbjct 4818 GATGTGATGAGTCGACATCG 4799 Score = 138 bits (152), Expect = 2e-30 Identities = 100/116 (86%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| ||| ||||||||| ||||||||| |||||| ||| ||| || ||||||| ||| Sbjct 63 GATAGGAACCAAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTAATCGGC 122 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||| ||||||||| |||| ||||||| |||||||| || ||| |||||||| Sbjct 123 GAACAGCCGAACCCTTGGAACCTTCTTCAGCTCCAGGATGTGATGAGTCGACATCG 178 >seq1542 Length=8130 Score = 158 bits (174), Expect = 2e-36 Identities = 192/260 (74%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 ||||||||| ||||| ||||| ||| |||||| | | || |||| || Sbjct 307 CTTAGATGCTTTCAGTAACTATCCAAAATAAATTTAGCTACTCGGCGATGCCTTTTA--- 251 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||| | | |||||||| ||| || || |||||||||||||||| | || | || Sbjct 250 -ACAACCGATACACCAGAGATTTACCCTTCTCGGTCCTCTCGTACTAGAGTTAGATTCTT 192 Query 137 TCAAATTTCCTACGCCCACGACG-GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||| |||| | | | |||||| ||| ||||||||| ||||||||| ||||| Sbjct 191 TCATTTTTCAAAATATCTATAGAAGATAGGAACCAAACTGTCTCACGACGTTCTAAACCC 132 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 | ||| ||| || ||||||| ||||||||||| ||||||||| |||| ||||||| |||| Sbjct 131 AACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGAACCTTCTTCAGCTCCAG 72 Query 256 GATGAGACGAGCCGACATCG 275 |||| || ||| |||||||| Sbjct 71 GATGTGATGAGTCGACATCG 52 Score = 150 bits (166), Expect = 3e-34 Identities = 192/262 (73%), Gaps = 7/262 (3%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 ||||||||| ||||| |||||| ||| |||||| | | || |||| || Sbjct 7497 CTTAGATGCTTTCAGTAATTATCCAAAATAAATTTAGCTACTCGGCGATGCCTTTTA--- 7553 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCC--TCTCGTACTAAGGACAGCTCC 134 ||||| | | |||||||| ||| || || |||||| |||||||||| | || | | Sbjct 7554 -ACAACCGATACACCAGAGATTTACCCTTCTCGGTCCCCTCTCGTACTAGAGTTAGATTC 7612 Query 135 TCTCAAATTTCCTACGCCCACGACG-GATAGGGACCGAACTGTCTCGCGACGTTCTGAAC 193 | ||| |||| | | | ||| || ||| ||||||||| ||||||||| ||| Sbjct 7613 TTTCATTTTTCAAAATATCTATAGAAGATGGGAACCAAACTGTCTCACGACGTTCTAAAC 7672 Query 194 CCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCC 253 ||| ||| ||| || ||||||| ||||||||||| ||||||||| |||| ||||||| || Sbjct 7673 CCAACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTGGAACCTTCTTCAGCTCC 7732 Query 254 AGGATGAGACGAGCCGACATCG 275 |||||| || ||| |||||||| Sbjct 7733 AGGATGTGATGAGTCGACATCG 7754 >seq1731 Length=9262 Score = 154 bits (170), Expect = 2e-35 Identities = 192/260 (74%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAG 76 ||||||||| ||||| |||||| ||| |||||| | | || |||| || Sbjct 8971 CTTAGATGCTTTCAGTAATTATCCAAAATAAATTTAGCTACTCGGCGATGCCTTTTA--- 9027 Query 77 TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTC 136 ||||| | | |||||||| ||| || || |||||||||||||||| | || | || Sbjct 9028 -ACAACCGATACACCAGAGATTTACCCTTCTCGGTCCTCTCGTACTAGAGTTAGATTCTT 9086 Query 137 TCAAATTTCCTACGCCCACGACG-GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCC 195 ||| |||| | | | |||||| ||| ||||||||| ||||||||| ||||| Sbjct 9087 TCATTTTTCAAAATATCTATAGAAGATAGGAACCAAACTGTCTCACGACGTTCTAAACCC 9146 Query 196 AGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAG 255 | ||| ||| || ||| ||| ||||||||||| ||||||||| |||| ||||||| |||| Sbjct 9147 AACTCACGTACCACTT-AATCGGCGAACAGCCGAACCCTTGGTACCTTCTTCAGCTCCAG 9205 Query 256 GATGAGACGAGCCGACATCG 275 |||| || ||| |||||||| Sbjct 9206 GATGTGATGAGTCGACATCG 9225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780753541912