Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq4083 114 3e-23 seq3307 114 3e-23 seq3148 114 3e-23 seq2861 114 3e-23 seq1731 114 3e-23 seq1542 114 3e-23 seq702 114 3e-23 seq116 114 3e-23 >seq4083 Length=11212 Score = 114 bits (126), Expect = 3e-23 Identities = 144/194 (74%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||||| | ||| || ||| ||| ||| || |||| |||| |||| ||| || Sbjct 8702 CTTTACAACCTAATTAGCCGTCATCACTCACTCGGTATTGCTGGATCAAGCTTTCGCTCA 8761 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||| ||||||||||||||||| | ||| ||| |||||||||||| ||| | Sbjct 8762 TTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAAT 8820 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||||| |||| || ||| |||||||| ||| | | || ||| | | ||| | | Sbjct 8821 GTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGGCTTGGTAGTCTTTTAAACTAC 8880 Query 183 CAACTAGC-TAATC 195 |||||| | ||||| Sbjct 8881 CAACTACCATAATC 8894 >seq3307 Length=10392 Score = 114 bits (126), Expect = 3e-23 Identities = 144/194 (74%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||||| | ||| || ||| ||| ||| || |||| |||| |||| ||| || Sbjct 8571 CTTTACAACCTAATTAGCCGTCATCACTCACTCGGTATTGCTGGATCAAGCTTTCGCTCA 8512 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||| ||||||||||||||||| | ||| ||| |||||||||||| ||| | Sbjct 8511 TTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAAT 8453 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||||| |||| || ||| |||||||| ||| | | || ||| | | ||| | | Sbjct 8452 GTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGGCTTGGTAGTCTTTTAAACTAC 8393 Query 183 CAACTAGC-TAATC 195 |||||| | ||||| Sbjct 8392 CAACTACCATAATC 8379 >seq3148 Length=3308 Score = 114 bits (126), Expect = 3e-23 Identities = 144/194 (74%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||||| | ||| || ||| ||| ||| || |||| |||| |||| ||| || Sbjct 994 CTTTACAACCTAATTAGCCGTCATCACTCACTCGGTATTGCTGGATCAAGCTTTCGCTCA 935 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||| ||||||||||||||||| | ||| ||| |||||||||||| ||| | Sbjct 934 TTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAAT 876 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||||| |||| || ||| |||||||| ||| | | || ||| | | ||| | | Sbjct 875 GTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGGCTTGGTAGTCTTTTAAACTAC 816 Query 183 CAACTAGC-TAATC 195 |||||| | ||||| Sbjct 815 CAACTACCATAATC 802 Score = 114 bits (126), Expect = 3e-23 Identities = 144/194 (74%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||||| | ||| || ||| ||| ||| || |||| |||| |||| ||| || Sbjct 2317 CTTTACAACCTAATTAGCCGTCATCACTCACTCGGTATTGCTGGATCAAGCTTTCGCTCA 2376 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||| ||||||||||||||||| | ||| ||| |||||||||||| ||| | Sbjct 2377 TTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAAT 2435 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||||| |||| || ||| |||||||| ||| | | || ||| | | ||| | | Sbjct 2436 GTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGGCTTGGTAGTCTTTTAAACTAC 2495 Query 183 CAACTAGC-TAATC 195 |||||| | ||||| Sbjct 2496 CAACTACCATAATC 2509 >seq2861 Length=8136 Score = 114 bits (126), Expect = 3e-23 Identities = 144/194 (74%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||||| | ||| || ||| ||| ||| || |||| |||| |||| ||| || Sbjct 7649 CTTTACAACCTAATTAGCCGTCATCACTCACTCGGTATTGCTGGATCAAGCTTTCGCTCA 7590 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||| ||||||||||||||||| | ||| ||| |||||||||||| ||| | Sbjct 7589 TTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAAT 7531 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||||| |||| || ||| |||||||| ||| | | || ||| | | ||| | | Sbjct 7530 GTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGGCTTGGTAGTCTTTTAAACTAC 7471 Query 183 CAACTAGC-TAATC 195 |||||| | ||||| Sbjct 7470 CAACTACCATAATC 7457 >seq1731 Length=9262 Score = 114 bits (126), Expect = 3e-23 Identities = 144/194 (74%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||||| | ||| || ||| ||| ||| || |||| |||| |||| ||| || Sbjct 6382 CTTTACAACCTAATTAGCCGTCATCACTCACTCGGTATTGCTGGATCAAGCTTTCGCTCA 6441 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||| ||||||||||||||||| | ||| ||| |||||||||||| ||| | Sbjct 6442 TTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAAT 6500 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||||| |||| || ||| |||||||| ||| | | || ||| | | ||| | | Sbjct 6501 GTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGGCTTGGTAGTCTTTTAAACTAC 6560 Query 183 CAACTAGC-TAATC 195 |||||| | ||||| Sbjct 6561 CAACTACCATAATC 6574 >seq1542 Length=8130 Score = 114 bits (126), Expect = 3e-23 Identities = 144/194 (74%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||||| | ||| || ||| ||| ||| || |||| |||| |||| ||| || Sbjct 2902 CTTTACAACCTAATTAGCCGTCATCACTCACTCGGTATTGCTGGATCAAGCTTTCGCTCA 2843 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||| ||||||||||||||||| | ||| ||| |||||||||||| ||| | Sbjct 2842 TTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAAT 2784 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||||| |||| || ||| |||||||| ||| | | || ||| | | ||| | | Sbjct 2783 GTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGGCTTGGTAGTCTTTTAAACTAC 2724 Query 183 CAACTAGC-TAATC 195 |||||| | ||||| Sbjct 2723 CAACTACCATAATC 2710 Score = 114 bits (126), Expect = 3e-23 Identities = 144/194 (74%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||||| | ||| || ||| ||| ||| || |||| |||| |||| ||| || Sbjct 4902 CTTTACAACCTAATTAGCCGTCATCACTCACTCGGTATTGCTGGATCAAGCTTTCGCTCA 4961 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||| ||||||||||||||||| | ||| ||| |||||||||||| ||| | Sbjct 4962 TTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAAT 5020 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||||| |||| || ||| |||||||| ||| | | || ||| | | ||| | | Sbjct 5021 GTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGGCTTGGTAGTCTTTTAAACTAC 5080 Query 183 CAACTAGC-TAATC 195 |||||| | ||||| Sbjct 5081 CAACTACCATAATC 5094 >seq702 Length=10881 Score = 114 bits (126), Expect = 3e-23 Identities = 144/194 (74%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||||| | ||| || ||| ||| ||| || |||| |||| |||| ||| || Sbjct 5210 CTTTACAACCTAATTAGCCGTCATCACTCACTCGGTATTGCTGGATCAAGCTTTCGCTCA 5269 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||| ||||||||||||||||| | ||| ||| |||||||||||| ||| | Sbjct 5270 TTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAAT 5328 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||||| |||| || ||| |||||||| ||| | | || ||| | | ||| | | Sbjct 5329 GTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGGCTTGGTAGTCTTTTAAACTAC 5388 Query 183 CAACTAGC-TAATC 195 |||||| | ||||| Sbjct 5389 CAACTACCATAATC 5402 >seq116 Length=10949 Score = 114 bits (126), Expect = 3e-23 Identities = 144/194 (74%), Gaps = 3/194 (2%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||||| | ||| || ||| ||| ||| || |||| |||| |||| ||| || Sbjct 582 CTTTACAACCTAATTAGCCGTCATCACTCACTCGGTATTGCTGGATCAAGCTTTCGCTCA 523 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||| ||||||||||||||||| | ||| ||| |||||||||||| ||| | Sbjct 522 TTGTCCAAAATTCCCCACTGCTGCCT-TTAAAAAAGTTTGGGCCGTGTCTCAGTCCCAAT 464 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||||| |||| || ||| |||||||| ||| | | || ||| | | ||| | | Sbjct 463 GTGGCTGATCATTCTTTCAAACCAGCTAAAGATAATAGGCTTGGTAGTCTTTTAAACTAC 404 Query 183 CAACTAGC-TAATC 195 |||||| | ||||| Sbjct 403 CAACTACCATAATC 390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222324920192