Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1742 154 5e-35 seq3307 150 6e-34 seq3110 150 6e-34 seq2861 150 6e-34 seq1459 150 6e-34 seq702 150 6e-34 >seq1742 Length=13707 Score = 154 bits (170), Expect = 5e-35 Identities = 311/453 (69%), Gaps = 15/453 (3%) Strand=Plus/Minus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||||| ||||||||| ||||| ||| |||| | ||||| || |||| Sbjct 1664 AGACCCGAAACTGAGTGATCTAACCATGAACAGATTGAAAGATAGGTAAAACTATTTGGA 1605 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || ||||| ||| |||| | ||||| || ||||| ||||| |||| |||||||||| Sbjct 1604 GGATCGAACTCACATATGTGGCAAAATATGGAGATGATTTGTGGTTAGGAGTGAAAGGCT 1545 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || |||||| || |||||||||| || ||||| ||||| | |||| || | | ||| Sbjct 1544 AATCAAACTCAGAGATAGCTGGTTTTCCGCGAAATCTATTGAAGTAGAGCATTTAAAATC 1485 Query 214 ACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGC 273 | ||||||||||||| | ||||||||| | | |||||| ||| ||| Sbjct 1484 TTTTTTTGGGGTAGAGCACTCATTGAGCTAGGGGG-CGTAAAAACTTACTAAATTCTTGG 1426 Query 274 AAACTCCGAATGCGCATCA----GTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTC 329 ||||||||||| | | | | |||| || || | || ||||||||| Sbjct 1425 AAACTCCGAATACAAAAAAAAGTGATTTA----AATAGACAGACATTAGGCGCTAAGGTC 1370 Query 330 CGTGCCCGAGAGGAGAAGAATCCGGACT-ATCAGCTAAGGCCCCGAAATGACA-GCTAAG 387 | | ||||| || | || || | ||| ||||||| | | |||| | | ||||| Sbjct 1369 TTTTGTCAAGAGGGAAACAGCCCAGATTGATC-GCTAAGGTCTCTAAATAATATTCTAAG 1311 Query 388 TTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTC 447 | ||| || ||||| | | ||| | || | || |||||||||||||||| || Sbjct 1310 TGAAA--AAGGAAGTGAAAAAATGATTACAACCAGTAGGTAGGCTTGGAAGCAGCCA-TC 1254 Query 448 ATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||||| |||||| |||||| | ||| || Sbjct 1253 CTTTAAAGAAAGCGTAATAGCTCATTGGTCTAG 1221 >seq3307 Length=10392 Score = 150 bits (166), Expect = 6e-34 Identities = 310/453 (68%), Gaps = 15/453 (3%) Strand=Plus/Plus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||||| ||||||||| ||||| ||| |||| ||||| || |||| Sbjct 4058 AGACCCGAAACTGAGTGATCTAACCATGAACAGATTGAAAAATAGGTAAAACTATTTGGA 4117 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || ||||| ||| |||| | ||||| || ||||| ||||| |||| |||||||||| Sbjct 4118 GGATCGAACTCACATATGTGGCAAAATATGGAGATGATTTGTGGTTAGGAGTGAAAGGCT 4177 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || |||||| || |||||||||| || ||||| ||||| | |||| || | | ||| Sbjct 4178 AATCAAACTCAGAGATAGCTGGTTTTCCGCGAAATCTATTGAAGTAGAGCATTTAAAATC 4237 Query 214 ACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGC 273 | ||||||||||||| | ||||||||| | | |||||| ||| ||| Sbjct 4238 TTTTTTTGGGGTAGAGCACTCATTGAGCTAGGGGG-CGTAAAAACTTACTAAATTCTTGG 4296 Query 274 AAACTCCGAATGCGCATCA----GTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTC 329 ||||||||||| | | | | |||| || || | || ||||||||| Sbjct 4297 AAACTCCGAATACAAAAAAAAGTGATTTA----AATAGACAGACATTAGGCGCTAAGGTC 4352 Query 330 CGTGCCCGAGAGGAGAAGAATCCGGACT-ATCAGCTAAGGCCCCGAAATGACA-GCTAAG 387 | | ||||| || | || || | ||| ||||||| | | |||| | | ||||| Sbjct 4353 TTTTGTCAAGAGGGAAACAGCCCAGATTGATC-GCTAAGGTCTCTAAATAATATTCTAAG 4411 Query 388 TTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTC 447 | ||| || ||||| | | ||| | || | || |||||||||||||||| || Sbjct 4412 TGAAA--AAGGAAGTGAAAAAATGATTACAACCAGTAGGTAGGCTTGGAAGCAGCCA-TC 4468 Query 448 ATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||||| |||||| |||||| | ||| || Sbjct 4469 CTTTAAAGAAAGCGTAATAGCTCATTGGTCTAG 4501 >seq3110 Length=8458 Score = 150 bits (166), Expect = 6e-34 Identities = 310/453 (68%), Gaps = 15/453 (3%) Strand=Plus/Minus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||||| ||||||||| ||||| ||| |||| ||||| || |||| Sbjct 2998 AGACCCGAAACTGAGTGATCTAACCATGAACAGATTGAAAAATAGGTAAAACTATTTGGA 2939 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || ||||| ||| |||| | ||||| || ||||| ||||| |||| |||||||||| Sbjct 2938 GGATCGAACTCACATATGTGGCAAAATATGGAGATGATTTGTGGTTAGGAGTGAAAGGCT 2879 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || |||||| || |||||||||| || ||||| ||||| | |||| || | | ||| Sbjct 2878 AATCAAACTCAGAGATAGCTGGTTTTCCGCGAAATCTATTGAAGTAGAGCATTTAAAATC 2819 Query 214 ACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGC 273 | ||||||||||||| | ||||||||| | | |||||| ||| ||| Sbjct 2818 TTTTTTTGGGGTAGAGCACTCATTGAGCTAGGGGG-CGTAAAAACTTACTAAATTCTTGG 2760 Query 274 AAACTCCGAATGCGCATCA----GTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTC 329 ||||||||||| | | | | |||| || || | || ||||||||| Sbjct 2759 AAACTCCGAATACAAAAAAAAGTGATTTA----AATAGACAGACATTAGGCGCTAAGGTC 2704 Query 330 CGTGCCCGAGAGGAGAAGAATCCGGACT-ATCAGCTAAGGCCCCGAAATGACA-GCTAAG 387 | | ||||| || | || || | ||| ||||||| | | |||| | | ||||| Sbjct 2703 TTTTGTCAAGAGGGAAACAGCCCAGATTGATC-GCTAAGGTCTCTAAATAATATTCTAAG 2645 Query 388 TTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTC 447 | ||| || ||||| | | ||| | || | || |||||||||||||||| || Sbjct 2644 TGAAA--AAGGAAGTGAAAAAATGATTACAACCAGTAGGTAGGCTTGGAAGCAGCCA-TC 2588 Query 448 ATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||||| |||||| |||||| | ||| || Sbjct 2587 CTTTAAAGAAAGCGTAATAGCTCATTGGTCTAG 2555 >seq2861 Length=8136 Score = 150 bits (166), Expect = 6e-34 Identities = 310/453 (68%), Gaps = 15/453 (3%) Strand=Plus/Plus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||||| ||||||||| ||||| ||| |||| ||||| || |||| Sbjct 3136 AGACCCGAAACTGAGTGATCTAACCATGAACAGATTGAAAAATAGGTAAAACTATTTGGA 3195 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || ||||| ||| |||| | ||||| || ||||| ||||| |||| |||||||||| Sbjct 3196 GGATCGAACTCACATATGTGGCAAAATATGGAGATGATTTGTGGTTAGGAGTGAAAGGCT 3255 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || |||||| || |||||||||| || ||||| ||||| | |||| || | | ||| Sbjct 3256 AATCAAACTCAGAGATAGCTGGTTTTCCGCGAAATCTATTGAAGTAGAGCATTTAAAATC 3315 Query 214 ACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGC 273 | ||||||||||||| | ||||||||| | | |||||| ||| ||| Sbjct 3316 TTTTTTTGGGGTAGAGCACTCATTGAGCTAGGGGG-CGTAAAAACTTACTAAATTCTTGG 3374 Query 274 AAACTCCGAATGCGCATCA----GTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTC 329 ||||||||||| | | | | |||| || || | || ||||||||| Sbjct 3375 AAACTCCGAATACAAAAAAAAGTGATTTA----AATAGACAGACATTAGGCGCTAAGGTC 3430 Query 330 CGTGCCCGAGAGGAGAAGAATCCGGACT-ATCAGCTAAGGCCCCGAAATGACA-GCTAAG 387 | | ||||| || | || || | ||| ||||||| | | |||| | | ||||| Sbjct 3431 TTTTGTCAAGAGGGAAACAGCCCAGATTGATC-GCTAAGGTCTCTAAATAATATTCTAAG 3489 Query 388 TTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTC 447 | ||| || ||||| | | ||| | || | || |||||||||||||||| || Sbjct 3490 TGAAA--AAGGAAGTGAAAAAATGATTACAACCAGTAGGTAGGCTTGGAAGCAGCCA-TC 3546 Query 448 ATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||||| |||||| |||||| | ||| || Sbjct 3547 CTTTAAAGAAAGCGTAATAGCTCATTGGTCTAG 3579 Score = 147 bits (162), Expect = 7e-33 Identities = 309/453 (68%), Gaps = 15/453 (3%) Strand=Plus/Minus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||||| ||||||||| ||||| ||| |||| ||||| || |||| Sbjct 1841 AGACCCGAAACTGAGTGATCTAACCATGAACAGATTGAAAAATAGGTAAAACTATTTGGA 1782 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || ||||| ||| |||| | ||||| || ||||| ||||| |||| |||||||||| Sbjct 1781 GGATCGAACTCACATATGTGGCAAAATATGGAGATGATTTGTGGTTAGGAGTGAAAGGCT 1722 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || |||||| || |||||||||| || ||||| ||||| | |||| || | | ||| Sbjct 1721 AATCAAACTCAGAGATAGCTGGTTTTCCGCGAAATCTATTGAAGTAGAGCATTTAAAATC 1662 Query 214 ACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGC 273 | |||||||||||| | ||||||||| | | |||||| ||| ||| Sbjct 1661 TTTTTTTGGGGTAGAGCACNCATTGAGCTAGGGGG-CGTAAAAACTTACTAAATTCTTGG 1603 Query 274 AAACTCCGAATGCGCATCA----GTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTC 329 ||||||||||| | | | | |||| || || | || ||||||||| Sbjct 1602 AAACTCCGAATACAAAAAAAAGTGATTTA----AATAGACAGACATTAGGCGCTAAGGTC 1547 Query 330 CGTGCCCGAGAGGAGAAGAATCCGGACT-ATCAGCTAAGGCCCCGAAATGACA-GCTAAG 387 | | ||||| || | || || | ||| ||||||| | | |||| | | ||||| Sbjct 1546 TTTTGTCAAGAGGGAAACAGCCCAGATTGATC-GCTAAGGTCTCTAAATAATATTCTAAG 1488 Query 388 TTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTC 447 | ||| || ||||| | | ||| | || | || |||||||||||||||| || Sbjct 1487 TGAAA--AAGGAAGTGAAAAAATGATTACAACCAGTAGGTAGGCTTGGAAGCAGCCA-TC 1431 Query 448 ATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||||| |||||| |||||| | ||| || Sbjct 1430 CTTTAAAGAAAGCGTAATAGCTCATTGGTCTAG 1398 >seq1459 Length=12523 Score = 150 bits (166), Expect = 6e-34 Identities = 310/453 (68%), Gaps = 15/453 (3%) Strand=Plus/Minus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||||| ||||||||| ||||| ||| |||| ||||| || |||| Sbjct 2658 AGACCCGAAACTGAGTGATCTAACCATGAACAGATTGAAAAATAGGTAAAACTATTTGGA 2599 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || ||||| ||| |||| | ||||| || ||||| ||||| |||| |||||||||| Sbjct 2598 GGATCGAACTCACATATGTGGCAAAATATGGAGATGATTTGTGGTTAGGAGTGAAAGGCT 2539 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || |||||| || |||||||||| || ||||| ||||| | |||| || | | ||| Sbjct 2538 AATCAAACTCAGAGATAGCTGGTTTTCCGCGAAATCTATTGAAGTAGAGCATTTAAAATC 2479 Query 214 ACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGC 273 | ||||||||||||| | ||||||||| | | |||||| ||| ||| Sbjct 2478 TTTTTTTGGGGTAGAGCACTCATTGAGCTAGGGGG-CGTAAAAACTTACTAAATTCTTGG 2420 Query 274 AAACTCCGAATGCGCATCA----GTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTC 329 ||||||||||| | | | | |||| || || | || ||||||||| Sbjct 2419 AAACTCCGAATACAAAAAAAAGTGATTTA----AATAGACAGACATTAGGCGCTAAGGTC 2364 Query 330 CGTGCCCGAGAGGAGAAGAATCCGGACT-ATCAGCTAAGGCCCCGAAATGACA-GCTAAG 387 | | ||||| || | || || | ||| ||||||| | | |||| | | ||||| Sbjct 2363 TTTTGTCAAGAGGGAAACAGCCCAGATTGATC-GCTAAGGTCTCTAAATAATATTCTAAG 2305 Query 388 TTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTC 447 | ||| || ||||| | | ||| | || | || |||||||||||||||| || Sbjct 2304 TGAAA--AAGGAAGTGAAAAAATGATTACAACCAGTAGGTAGGCTTGGAAGCAGCCA-TC 2248 Query 448 ATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||||| |||||| |||||| | ||| || Sbjct 2247 CTTTAAAGAAAGCGTAATAGCTCATTGGTCTAG 2215 >seq702 Length=10881 Score = 150 bits (166), Expect = 6e-34 Identities = 310/453 (68%), Gaps = 15/453 (3%) Strand=Plus/Minus Query 34 AGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGA 93 ||||||||||| ||||||||| ||||| ||| |||| ||||| || |||| Sbjct 9723 AGACCCGAAACTGAGTGATCTAACCATGAACAGATTGAAAAATAGGTAAAACTATTTGGA 9664 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || ||||| ||| |||| | ||||| || ||||| ||||| |||| |||||||||| Sbjct 9663 GGATCGAACTCACATATGTGGCAAAATATGGAGATGATTTGTGGTTAGGAGTGAAAGGCT 9604 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || |||||| || |||||||||| || ||||| ||||| | |||| || | | ||| Sbjct 9603 AATCAAACTCAGAGATAGCTGGTTTTCCGCGAAATCTATTGAAGTAGAGCATTTAAAATC 9544 Query 214 ACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCATTGC 273 | ||||||||||||| | ||||||||| | | |||||| ||| ||| Sbjct 9543 TTTTTTTGGGGTAGAGCACTCATTGAGCTAGGGGG-CGTAAAAACTTACTAAATTCTTGG 9485 Query 274 AAACTCCGAATGCGCATCA----GTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTC 329 ||||||||||| | | | | |||| || || | || ||||||||| Sbjct 9484 AAACTCCGAATACAAAAAAAAGTGATTTA----AATAGACAGACATTAGGCGCTAAGGTC 9429 Query 330 CGTGCCCGAGAGGAGAAGAATCCGGACT-ATCAGCTAAGGCCCCGAAATGACA-GCTAAG 387 | | ||||| || | || || | ||| ||||||| | | |||| | | ||||| Sbjct 9428 TTTTGTCAAGAGGGAAACAGCCCAGATTGATC-GCTAAGGTCTCTAAATAATATTCTAAG 9370 Query 388 TTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTC 447 | ||| || ||||| | | ||| | || | || |||||||||||||||| || Sbjct 9369 TGAAA--AAGGAAGTGAAAAAATGATTACAACCAGTAGGTAGGCTTGGAAGCAGCCA-TC 9313 Query 448 ATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 |||||||| |||||| |||||| | ||| || Sbjct 9312 CTTTAAAGAAAGCGTAATAGCTCATTGGTCTAG 9280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689496224768