Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq3307 192 2e-46 seq3110 192 2e-46 seq2861 192 2e-46 seq1459 192 2e-46 seq702 192 2e-46 seq1742 167 8e-39 >seq3307 Length=10392 Score = 192 bits (212), Expect = 2e-46 Identities = 336/490 (69%), Gaps = 32/490 (7%) Strand=Plus/Minus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||||| | |||||||||| ||| ||||| | |||||||||| |||||||| |||| Sbjct 5509 ACCTTTGTACACCTCCGTTACTCTTTAGGAGGTGA-CCGCCCCAGTCAAACTACCAACCA 5451 Query 136 GGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAGTGGT 195 || |||| || | || |||| ||| | || | |||||||| Sbjct 5450 TACAATGTCT---------ATT-TAAAAAAATATTAGTTATTTATTATAATAAGAGTGGT 5401 Query 196 ATTTCAACAACGACTCCACAACC-ACTAGCGTGGCCGCATCATAGTCTCCCACCTATCCT 254 ||||||| || || |||| |||||||| | | | | | |||| ||| || Sbjct 5400 ATTTCAAGAATATCTAAACAATTTACTAGCGTAAAGGTCTAAACGATTACCACTTATACT 5341 Query 255 ACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGT 313 ||||| | | ||| ||||| ||| | |||| ||||| | |||||||||| ||| Sbjct 5340 ACACATATTAGATAAAATAACAATATAAAGATGTAGTAAAGGTTCACGGGGTCTTTCCGT 5281 Query 314 CCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAG 373 | | ||| ||||||| || || | ||| ||||| | | || | | ||| Sbjct 5280 CTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAG 5221 Query 374 ACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCG 433 ||||| ||| |||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 5220 ACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCG 5161 Query 434 CTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCA 493 ||||||||||| || | |||||| ||||||||||||||| |||| ||| Sbjct 5160 CTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGACTTCCATT---------- 5111 Query 494 CACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTC 553 | || || || |||| |||| |||||||||||||||||| ||||| | Sbjct 5110 ---------TAATGCGCAAACATCTCCTTTTAATCTTCCAGCACCGGGCAGGTGTCAGAC 5060 Query 554 CGTATACCTC 563 | ||||| || Sbjct 5059 CCTATACATC 5050 >seq3110 Length=8458 Score = 192 bits (212), Expect = 2e-46 Identities = 336/490 (69%), Gaps = 32/490 (7%) Strand=Plus/Plus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||||| | |||||||||| ||| ||||| | |||||||||| |||||||| |||| Sbjct 1547 ACCTTTGTACACCTCCGTTACTCTTTAGGAGGTGA-CCGCCCCAGTCAAACTACCAACCA 1605 Query 136 GGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAGTGGT 195 || |||| || | || |||| ||| | || | |||||||| Sbjct 1606 TACAATGTCT---------ATT-TAAAAAAATATTAGTTATTTATTATAATAAGAGTGGT 1655 Query 196 ATTTCAACAACGACTCCACAACC-ACTAGCGTGGCCGCATCATAGTCTCCCACCTATCCT 254 ||||||| || || |||| |||||||| | | | | | |||| ||| || Sbjct 1656 ATTTCAAGAATATCTAAACAATTTACTAGCGTAAAGGTCTAAACGATTACCACTTATACT 1715 Query 255 ACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGT 313 ||||| | | ||| ||||| ||| | |||| ||||| | |||||||||| ||| Sbjct 1716 ACACATATTAGATAAAATAACAATATAAAGATGTAGTAAAGGTTCACGGGGTCTTTCCGT 1775 Query 314 CCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAG 373 | | ||| ||||||| || || | ||| ||||| | | || | | ||| Sbjct 1776 CTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAG 1835 Query 374 ACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCG 433 ||||| ||| |||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 1836 ACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCG 1895 Query 434 CTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCA 493 ||||||||||| || | |||||| ||||||||||||||| |||| ||| Sbjct 1896 CTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGACTTCCATT---------- 1945 Query 494 CACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTC 553 | || || || |||| |||| |||||||||||||||||| ||||| | Sbjct 1946 ---------TAATGCGCAAACATCTCCTTTTAATCTTCCAGCACCGGGCAGGTGTCAGAC 1996 Query 554 CGTATACCTC 563 | ||||| || Sbjct 1997 CCTATACATC 2006 >seq2861 Length=8136 Score = 192 bits (212), Expect = 2e-46 Identities = 336/490 (69%), Gaps = 32/490 (7%) Strand=Plus/Minus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||||| | |||||||||| ||| ||||| | |||||||||| |||||||| |||| Sbjct 4587 ACCTTTGTACACCTCCGTTACTCTTTAGGAGGTGA-CCGCCCCAGTCAAACTACCAACCA 4529 Query 136 GGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAGTGGT 195 || |||| || | || |||| ||| | || | |||||||| Sbjct 4528 TACAATGTCT---------ATT-TAAAAAAATATTAGTTATTTATTATAATAAGAGTGGT 4479 Query 196 ATTTCAACAACGACTCCACAACC-ACTAGCGTGGCCGCATCATAGTCTCCCACCTATCCT 254 ||||||| || || |||| |||||||| | | | | | |||| ||| || Sbjct 4478 ATTTCAAGAATATCTAAACAATTTACTAGCGTAAAGGTCTAAACGATTACCACTTATACT 4419 Query 255 ACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGT 313 ||||| | | ||| ||||| ||| | |||| ||||| | |||||||||| ||| Sbjct 4418 ACACATATTAGATAAAATAACAATATAAAGATGTAGTAAAGGTTCACGGGGTCTTTCCGT 4359 Query 314 CCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAG 373 | | ||| ||||||| || || | ||| ||||| | | || | | ||| Sbjct 4358 CTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAG 4299 Query 374 ACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCG 433 ||||| ||| |||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 4298 ACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCG 4239 Query 434 CTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCA 493 ||||||||||| || | |||||| ||||||||||||||| |||| ||| Sbjct 4238 CTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGACTTCCATT---------- 4189 Query 494 CACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTC 553 | || || || |||| |||| |||||||||||||||||| ||||| | Sbjct 4188 ---------TAATGCGCAAACATCTCCTTTTAATCTTCCAGCACCGGGCAGGTGTCAGAC 4138 Query 554 CGTATACCTC 563 | ||||| || Sbjct 4137 CCTATACATC 4128 Score = 187 bits (206), Expect = 8e-45 Identities = 335/490 (68%), Gaps = 32/490 (7%) Strand=Plus/Plus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||||| | |||||||||| ||| ||||| | |||||||||| |||||||| |||| Sbjct 390 ACCTTTGTACACCTCCGTTACTCTTTAGGAGGTGA-CCGCCCCAGTCAAACTACCAACCA 448 Query 136 GGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAGTGGT 195 || |||| || | || |||| ||| | || | |||||||| Sbjct 449 TACAATGTCT---------ATT-TAAAAAAATATTAGTTATTTATTATAATAAGAGTGGT 498 Query 196 ATTTCAACAACGACTCCACAACC-ACTAGCGTGGCCGCATCATAGTCTCCCACCTATCCT 254 ||| ||| || || |||| |||||||| | | | | | |||| ||| || Sbjct 499 ATTACAAGAATATCTAAACAATTTACTAGCGTAAAGGTCTAAACGATTACCACTTATACT 558 Query 255 ACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGT 313 ||||| | | ||| ||||| ||| | |||| ||||| | |||||||||| ||| Sbjct 559 ACACATATTAGATAAAATAACAATATAAAGATGTAGTAAAGGTTCACGGGGTCTTTCCGT 618 Query 314 CCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAG 373 | | ||| ||||||| || || | ||| ||||| | | || | | ||| Sbjct 619 CTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAG 678 Query 374 ACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCG 433 ||||| ||| |||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 679 ACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCG 738 Query 434 CTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCA 493 ||||||||||| || | |||||| ||||||||||||||| |||| ||| Sbjct 739 CTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGACTTCCATT---------- 788 Query 494 CACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTC 553 | || || || |||| |||| |||||||||||||||||| ||||| | Sbjct 789 ---------TAATGCGCAAACATCTCCTTTTAATCTTCCAGCACCGGGCAGGTGTCAGAC 839 Query 554 CGTATACCTC 563 | ||||| || Sbjct 840 CCTATACATC 849 >seq1459 Length=12523 Score = 192 bits (212), Expect = 2e-46 Identities = 336/490 (69%), Gaps = 32/490 (7%) Strand=Plus/Plus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||||| | |||||||||| ||| ||||| | |||||||||| |||||||| |||| Sbjct 1207 ACCTTTGTACACCTCCGTTACTCTTTAGGAGGTGA-CCGCCCCAGTCAAACTACCAACCA 1265 Query 136 GGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAGTGGT 195 || |||| || | || |||| ||| | || | |||||||| Sbjct 1266 TACAATGTCT---------ATT-TAAAAAAATATTAGTTATTTATTATAATAAGAGTGGT 1315 Query 196 ATTTCAACAACGACTCCACAACC-ACTAGCGTGGCCGCATCATAGTCTCCCACCTATCCT 254 ||||||| || || |||| |||||||| | | | | | |||| ||| || Sbjct 1316 ATTTCAAGAATATCTAAACAATTTACTAGCGTAAAGGTCTAAACGATTACCACTTATACT 1375 Query 255 ACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGT 313 ||||| | | ||| ||||| ||| | |||| ||||| | |||||||||| ||| Sbjct 1376 ACACATATTAGATAAAATAACAATATAAAGATGTAGTAAAGGTTCACGGGGTCTTTCCGT 1435 Query 314 CCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAG 373 | | ||| ||||||| || || | ||| ||||| | | || | | ||| Sbjct 1436 CTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAG 1495 Query 374 ACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCG 433 ||||| ||| |||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 1496 ACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCG 1555 Query 434 CTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCA 493 ||||||||||| || | |||||| ||||||||||||||| |||| ||| Sbjct 1556 CTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGACTTCCATT---------- 1605 Query 494 CACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTC 553 | || || || |||| |||| |||||||||||||||||| ||||| | Sbjct 1606 ---------TAATGCGCAAACATCTCCTTTTAATCTTCCAGCACCGGGCAGGTGTCAGAC 1656 Query 554 CGTATACCTC 563 | ||||| || Sbjct 1657 CCTATACATC 1666 >seq702 Length=10881 Score = 192 bits (212), Expect = 2e-46 Identities = 336/490 (69%), Gaps = 32/490 (7%) Strand=Plus/Plus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||||| | |||||||||| ||| ||||| | |||||||||| |||||||| |||| Sbjct 8272 ACCTTTGTACACCTCCGTTACTCTTTAGGAGGTGA-CCGCCCCAGTCAAACTACCAACCA 8330 Query 136 GGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAGTGGT 195 || |||| || | || |||| ||| | || | |||||||| Sbjct 8331 TACAATGTCT---------ATT-TAAAAAAATATTAGTTATTTATTATAATAAGAGTGGT 8380 Query 196 ATTTCAACAACGACTCCACAACC-ACTAGCGTGGCCGCATCATAGTCTCCCACCTATCCT 254 ||||||| || || |||| |||||||| | | | | | |||| ||| || Sbjct 8381 ATTTCAAGAATATCTAAACAATTTACTAGCGTAAAGGTCTAAACGATTACCACTTATACT 8440 Query 255 ACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGT 313 ||||| | | ||| ||||| ||| | |||| ||||| | |||||||||| ||| Sbjct 8441 ACACATATTAGATAAAATAACAATATAAAGATGTAGTAAAGGTTCACGGGGTCTTTCCGT 8500 Query 314 CCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAG 373 | | ||| ||||||| || || | ||| ||||| | | || | | ||| Sbjct 8501 CTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAG 8560 Query 374 ACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCG 433 ||||| ||| |||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 8561 ACAGCGGGGATGTCGTTACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCG 8620 Query 434 CTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCA 493 ||||||||||| || | |||||| ||||||||||||||| |||| ||| Sbjct 8621 CTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGACTTCCATT---------- 8670 Query 494 CACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTC 553 | || || || |||| |||| |||||||||||||||||| ||||| | Sbjct 8671 ---------TAATGCGCAAACATCTCCTTTTAATCTTCCAGCACCGGGCAGGTGTCAGAC 8721 Query 554 CGTATACCTC 563 | ||||| || Sbjct 8722 CCTATACATC 8731 >seq1742 Length=13707 Score = 167 bits (184), Expect = 8e-39 Identities = 332/490 (68%), Gaps = 34/490 (7%) Strand=Plus/Plus Query 76 ACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTTAAACTACCCACCA 135 ||||||| | |||||||||| ||| ||||| | |||||| ||| |||||||| |||| Sbjct 217 ACCTTTGTACACCTCCGTTACTCTTTAGGAGGTGA-CCGCCC-AGTCAAACTACCAACCA 274 Query 136 GGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTACGGTCAGAGTGGT 195 || |||| || | || |||| ||| | || | |||||||| Sbjct 275 TACAATGTCT---------ATT-TAAAAAAATATTAGTTATTTATTATAATAAGAGTGGT 324 Query 196 ATTTCAACAACGACTCCACAACC-ACTAGCGTGGCCGCATCATAGTCTCCCACCTATCCT 254 ||||||| || || |||| |||||||| | | | | | |||| ||| || Sbjct 325 ATTTCAAGAATATCTAAACAATTTACTAGCGTAAAGGTCTAAACGATTACCACTTATACT 384 Query 255 ACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC-CGGGGTCTTTTCGT 313 ||||| | | ||| ||||| ||| | |||| ||||| | ||| |||||| ||| Sbjct 385 ACACATATTAGATAAAATAACAATATAAAGATGTAGTAAAGGTTCACGGAGTCTTTCCGT 444 Query 314 CCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAG 373 | | ||| ||||||| || || | ||| ||||| | | || | | ||| Sbjct 445 CTAACTATAGAAAATCCGCATCTTCACGGATAATTCAAATTCACTGAGTCTATATTGGAG 504 Query 374 ACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCG 433 ||||| ||| |||||||| |||||| | |||||||||||||||||||||||| |||||| Sbjct 505 ACAGCGGGGATGTCGTTACACCATTCAT-CAGGTCGGAACTTACCCGACAAGGGATTTCG 563 Query 434 CTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCA 493 ||||||||||| || | |||||| ||||||||||||||| |||| ||| Sbjct 564 CTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGACTTCCATT---------- 613 Query 494 CACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTC 553 | || || || |||| |||| |||||||||||||||||| ||||| | Sbjct 614 ---------TAATGCGCAAACATCTCCTTTTAATCTTCCAGCACCGGGCAGGTGTCAGAC 664 Query 554 CGTATACCTC 563 | ||||| || Sbjct 665 CCTATACATC 674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702295438592