Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20nicotianae_20[genbank_20GCA_5F001483015.1_202015-12- 29] 6,142 sequences; 81,610,141 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2358 259 4e-64 seq5877 230 2e-55 >seq2358 Length=23655 Score = 259 bits (286), Expect = 4e-64 Identities = 1093/1698 (64%), Gaps = 71/1698 (4%) Strand=Plus/Minus Query 65123 TAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTT 65182 |||||||||||||||||||| || |||||| || || ||||| || | | | || Sbjct 15248 TAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACG-TCAGCTT 15190 Query 65183 GCATA-ATTCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACC 65241 | | | |||| ||||| | || || ||||||||||||||||| ||| ||| || Sbjct 15189 ACTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATATAAGCGCC 15130 Query 65242 ACGATCTGCAGCCATGTCAATGATACGACGTCCCGAT--ATCTCCCAGACGGTCTTGTAC 65299 ||| || || | || ||| | || || | | | | | |||||||| || ||||||||| Sbjct 15129 ACGGTCAGCCGACAGGTCCA-GA-ACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTAC 15072 Query 65300 AGGCGACGTACC-TCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGA-CGTGCAA 65357 | | || | ||| ||||| |||| | | ||| || || |||| | | | || Sbjct 15071 TT-CTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATTCAG 15013 Query 65358 TAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGT 65417 ||| ||||||| | | | ||| | || | |||||||| | | | || | Sbjct 15012 -AATCTGATTACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATCAGAT 14954 Query 65418 GACGATTGATGAC--TTG-GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACG 65474 || ||| | || | | |||||| || | || ||||||||| || |||||||||| Sbjct 14953 -AC--TTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGACG 14897 Query 65475 TGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGG 65534 || || || | || || ||||||| || || || || || || || || ||||||| Sbjct 14896 TGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGG 14837 Query 65535 GAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGC---AATTCGT 65591 | || |||| || ||||| || | |||| || |||| || | | | || Sbjct 14836 GTGCAACCAGCAGCGAGTTACGGAGACCGTG---TTTAATGACGTCATCTTTTAGTGCGG 14780 Query 65592 CCCAGTTCCACATCG--GTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGT 65649 |||||||||| | | | | | || ||| |||||| || || | | | Sbjct 14779 CCCAGTTCCAAAGCCCAGATGAAGGTGTG-----ACGCCCCACATGTCGAACTGGAAGAT 14725 Query 65650 TCCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTG 65709 || |||||||||| || || |||| | ||||| ||| ||| |||||| | Sbjct 14724 ACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAATCTC 14665 Query 65710 ACAGCTG-GTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCAC 65768 || | ||||| | || ||||| || || |||||||| ||| || | ||||| Sbjct 14664 -CATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCAC 14606 Query 65769 GTGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGA 65827 | || | ||||||| ||| | || ||| |||| || | || |||||||| || Sbjct 14605 GAGCTTGCGGGCTCTCGAACG-CGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGG 14547 Query 65828 ACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAG 65887 || |||||||| ||||||||||| |||| ||||| | ||||| | ||||| || Sbjct 14546 ACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCCTCTGCAACAGGATAA 14487 Query 65888 TAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGA-----TAC-GT 65941 || |||| ||||| | || | ||||| || | ||| | || | ||| || Sbjct 14486 TAGTTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGT 14427 Query 65942 CGCAATTGT--TCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACT 65999 | | |||| ||||| || | |||| |||||||| Sbjct 14426 CTC--TTGTAGTCGAA--CACACCGTTTT----------------------CCACAAACA 14393 Query 66000 TGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGA 66059 | || || || | ||| || | |||||| || || | ||| || || | || ||||| | Sbjct 14392 TAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCA 14333 Query 66060 CAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119 | |||| ||| | || ||| | || || || ||||| ||||| || || ||||| Sbjct 14332 TGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGGTTCGACTTGC 14273 Query 66120 GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGA 66179 | || ||| |||||||| | |||| | || || ||||||| || | || | || Sbjct 14272 GGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGA 14213 Query 66180 TGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTAC-CGCCCTACCTTTGCGTTCGTAA 66238 | ||| ||| || | || || | || | ||| ||| | |||| ||||| Sbjct 14212 TAGCGAACCACAGCTGCTGAGCGTTGATTGT-CTTACGCGCACGTCCTTCCTTCTCGTAC 14154 Query 66239 TGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGT 66298 | ||| || || ||| || || ||||| ||| |||||| ||| | || Sbjct 14153 TTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTG 14094 Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358 ||||| | || ||| | |||| || || | ||| || |||||||| | | Sbjct 14093 GGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACC 14034 Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418 || || ||||| || | ||||| || || ||| |||| | ||||| || || |||| Sbjct 14033 CACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCTTACGCAGA 13974 Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 || |||||||| || | |||||| ||||| || |||| |||||| |||||||||||| | Sbjct 13973 TCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTG 13914 Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538 || || || || || ||||| || |||||||| | ||| || ||||||||||| || Sbjct 13913 CGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGG 13854 Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATC 66597 | | |||||||| ||| || |||||| ||| | | | | || || || || | Sbjct 13853 ATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGAT-GTAGCTGTTAGTGGCGCGGATGTT 13795 Query 66598 GTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGT 66657 ||| | | | | ||| ||||| || ||| || ||||| || || | | || Sbjct 13794 GTGCATACTGATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGT 13735 Query 66658 CCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTG 66717 | | ||||| ||||| |||||| ||| || | || ||| |||| ||| | || Sbjct 13734 GTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGAAGACAACTG 13675 Query 66718 GGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGA 66777 || || ||| |||| |||||| || || || |||||||| ||| | | | || Sbjct 13674 AGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAACTTCTGCGA 13615 Query 66778 CATGTAATTGTACGTCTC 66795 |||| | ||||||||| Sbjct 13614 CATGAGCTCGTACGTCTC 13597 >seq5877 Length=64605 Score = 230 bits (254), Expect = 2e-55 Identities = 601/893 (67%), Gaps = 39/893 (4%) Strand=Plus/Minus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 |||||||| |||||||||| || | | || | |||| |||||||| || || || Sbjct 10539 CGTTTCGTGCTGTTCCCCATTCAGGAACACGAAGTGTGGCAGATGTACAAGAAAGCCGAG 10480 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGAT-TTGTCCAAAGACATGAATGACTGGGAGC- 61171 || ||||||||||||| |||||| |||| |||| || ||| | || |||||| ||| Sbjct 10479 GCCTCCTTCTGGACGGCTGAGGAGCTCGACCTTGTGCAC-GACCTCAAGGACTGG-AGCA 10422 Query 61172 -GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCG 61230 | | | || | || | ||| ||||| || || ||| | || ||||| || || Sbjct 10421 AGCTCACGGA-CAACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGT 10363 Query 61231 GACGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTC 61286 ||||||||||| || ||||| || || |||| ||| | || ||||| ||| | Sbjct 10362 GACGGTATCGTGAACGAGAACTTGGCCAT--GAAC--TTCAGCAACGAAGTGCAGGTGCC 10307 Query 61287 GGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTA 61346 ||||| ||||| ||||| ||||||||||| ||||| ||||| | ||||||||| | || Sbjct 10306 CGAGGCTCGTTGCTTCTATGGCTTCCAGATCGCCATTGAGAACATTCACTCGGAGGTCTA 10247 Query 61347 CAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCG-GAACGTGAACGAT-TGTTCAA 61403 | | ||||| || |||||||||| ||| ||| || ||| | || || | | Sbjct 10246 CTCACTGCTCATTGACACGTACATCAAGGACGCGATCGAGAA---GGACCATCTCCTGCG 10190 Query 61404 TGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-A 61462 |||||| ||||| || || || | | ||| || | ||||| |||| ||| | | Sbjct 10189 TGCCATTGAGACCATCCCTTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGA 10130 Query 61463 CC--AGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGT 61520 || || | | || | | || || ||||||| || || | || || || | Sbjct 10129 CCCGCGTGTATC--CT-CCTACCCGGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCAT 10073 Query 61521 ATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGG 61580 || ||| || || || | | ||||||||| | ||||| || || || |||||||| Sbjct 10072 CTTCTTCTCGGGCTCTTTCTGCTCCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGG 10013 Query 61581 TCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTG-CTG 61639 ||||| |||| || ||| | || || |||||||||||||| || || | ||| Sbjct 10012 TCTGAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCCTG 9953 Query 61640 --TTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGAT 61697 ||||| || || | | ||||| | | | ||||| ||||| ||||| Sbjct 9952 CCTTTTG-TACTC-----CAAGCTGGTCACCAAGCTGCCGGAGAGCCGTGTACACGAGAT 9899 Query 61698 TGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACT 61757 ||||||| || || || || || || ||| || |||| | | || || || Sbjct 9898 CATTCGTGACGCTGTGGTGATTGAGCACGAGTTTGTGCGTGACTCGCTCCCTGTGGAGCT 9839 Query 61758 CATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG-- 61815 || || ||||| | || || |||| ||||| ||||| || || || ||||||||| Sbjct 9838 GATTGGTATGAACTCTGCCCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCT 9779 Query 61816 TTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGAC 61875 | ||| || ||| || |||||| | | || ||||| ||||| | |||||| Sbjct 9778 CTACTCGCTT--GGTGTGTCCAAGATCTACCACGCTAAGAACCCTTTTGACTGGATGGAC 9721 Query 61876 ATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| || || | |||||||| || ||||||||||| ||||| ||||| || Sbjct 9720 ATGATCTCTCTCCAAGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTA 9668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397538239798880