Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq5385 127 7e-27 seq3868 78.8 3e-12 >seq5385 Length=7351 Score = 127 bits (140), Expect = 7e-27 Identities = 85/95 (89%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | |||||||||||||| ||||| Sbjct 127 CTTTTGTTCTACATGAGATTTCTGTTCTCATTGAGCTCACCTTAGGACACCTGTGTTATC 186 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 101 |||||||||||||||||||||||||||||||||| Sbjct 187 ATTTAACAGATGTGCCGCCCCAGCCAAACTCCCCA 221 >seq3868 Length=1835 Score = 78.8 bits (86), Expect = 3e-12 Identities = 136/194 (70%), Gaps = 13/194 (7%) Strand=Plus/Minus Query 85 CCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGCGAAG-----GA 139 ||||||||||||||||||||||| ||||| || || | || || | || || Sbjct 192 CCCAGCCAAACTCCCCACCTGACGATGTCTTCCACGTAGCTCACCCAGGCAAAAGCCCGA 133 Query 140 CCTTAACGCCAGAAA--ATGGTCGGTGAAGAC---CAGTTCCG-CTTCATTGATTAAGTa 193 |||| | |||| | | | | |||| | ||| | | | |||| | |||||| Sbjct 132 GCTTACAACTAGAACTGAGCGGCCGCGAAGCCACGCAGATGCTACATCATGGTATAAGTA 73 Query 194 aaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACA 253 ||| ||| | || ||||||||||||||| || | | | ||||||||||||||||| Sbjct 72 AAACAACATTGAGAGTAGTGGTATTTCACGGACGGCAGAGC--CTCCCACTTATTCTACA 15 Query 254 CCTCTCAAGTCATT 267 |||| ||||||||| Sbjct 14 CCTCCCAAGTCATT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635093891872