Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1827 93.3 1e-16 seq4747 84.2 7e-14 seq2035 80.6 8e-13 >seq1827 Length=1439 Score = 93.3 bits (102), Expect = 1e-16 Identities = 65/73 (89%), Gaps = 2/73 (3%) Strand=Plus/Minus Query 422 CCATTCGCAGTTTCACTGTATAGAT--TGCTTATACTTAGACATGCATGGCTTAATCTTT 479 |||||||||||||||| ||| | | || |||||||||||||||||||||||||||||| Sbjct 73 CCATTCGCAGTTTCACAGTACAAAACGTGTTTATACTTAGACATGCATGGCTTAATCTTT 14 Query 480 GAGACAAGCATAT 492 ||||||||| ||| Sbjct 13 GAGACAAGCGTAT 1 >seq4747 Length=29988 Score = 84.2 bits (92), Expect = 7e-14 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 ||||||||| ||||| ||||||| ||||| ||| | |||||||||| ||| | | || Sbjct 25909 GCATGTATTTGCTCTTGAATTACTACGGTAATCGTAGCAGTAAGGTACCATCGAGTGGAC 25968 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCAC 437 |||| |||| | |||||||| ||||||||||| Sbjct 25969 TATAATTGATATGTTGAGCCATACGCAGTTTCAC 26002 >seq2035 Length=11717 Score = 80.6 bits (88), Expect = 8e-13 Identities = 90/119 (76%), Gaps = 6/119 (5%) Strand=Plus/Minus Query 160 TTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAAT 219 ||||||||| || |||||||||||| || ||||||||| |||| ||||||||||||||| Sbjct 1397 TTACCCGTTAATGCCATGGTAGGCCCATACCCTACCATCCAAAGCTGATAGGGCAGAAAT 1338 Query 220 TTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA 278 | | || ||||| || ||| ||||| || ||||||||||| ||| || Sbjct 1337 TCAATCGATTTATCGC--GCAAAAG----CGCGATCCGCACAGTTATTATGACTCAACA 1285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510301990144