Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4581 259 4e-64 seq4510 226 2e-54 >seq4581 Length=10530 Score = 259 bits (286), Expect = 4e-64 Identities = 1093/1698 (64%), Gaps = 71/1698 (4%) Strand=Plus/Minus Query 65123 TAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTT 65182 |||||||||||||||||||| || |||||| || || ||||| || | | | || Sbjct 5636 TAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACG-TCAGCTT 5578 Query 65183 GCATA-ATTCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACC 65241 | | | |||| ||||| | || || ||||||||||||||||| ||| ||| || Sbjct 5577 ACTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATATAAGCGCC 5518 Query 65242 ACGATCTGCAGCCATGTCAATGATACGACGTCCCGAT--ATCTCCCAGACGGTCTTGTAC 65299 ||| || || | || ||| | || || | | | | | |||||||| || ||||||||| Sbjct 5517 ACGGTCAGCCGACAGGTCCA-GA-ACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTAC 5460 Query 65300 AGGCGACGTACC-TCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGA-CGTGCAA 65357 | | || | ||| ||||| |||| | | ||| || || |||| | | | || Sbjct 5459 TT-CTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATTCAG 5401 Query 65358 TAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGT 65417 ||| ||||||| | | | ||| | || | |||||||| | | | || | Sbjct 5400 -AATCTGATTACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATCAGAT 5342 Query 65418 GACGATTGATGAC--TTG-GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACG 65474 || ||| | || | | |||||| || | || ||||||||| || |||||||||| Sbjct 5341 -AC--TTGTTAACAATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGACG 5285 Query 65475 TGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGG 65534 || || || | || || ||||||| || || || || || || || || ||||||| Sbjct 5284 TGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGG 5225 Query 65535 GAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGC---AATTCGT 65591 | || |||| || ||||| || | |||| || |||| || | | | || Sbjct 5224 GTGCAACCAGCAGCGAGTTACGGAGACCGTG---TTTAATGACGTCATCTTTTAGTGCGG 5168 Query 65592 CCCAGTTCCACATCG--GTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGT 65649 |||||||||| | | | | | || ||| |||||| || || | | | Sbjct 5167 CCCAGTTCCAAAGCCCAGATGAAGGTGTG-----ACGCCCCACATGTCGAACTGGAAGAT 5113 Query 65650 TCCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTG 65709 || |||||||||| || || |||| | ||||| ||| ||| |||||| | Sbjct 5112 ACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAATCTC 5053 Query 65710 ACAGCTG-GTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCAC 65768 || | ||||| | || ||||| || || |||||||| ||| || | ||||| Sbjct 5052 -CATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCAC 4994 Query 65769 GTGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGA 65827 | || | ||||||| ||| | || ||| |||| || | || |||||||| || Sbjct 4993 GAGCTTGCGGGCTCTCGAACG-CGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGG 4935 Query 65828 ACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAG 65887 || |||||||| ||||||||||| |||| ||||| | ||||| | ||||| || Sbjct 4934 ACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCCTCTGCAACAGGATAA 4875 Query 65888 TAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGA-----TAC-GT 65941 || |||| ||||| | || | ||||| || | ||| | || | ||| || Sbjct 4874 TAGTTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGT 4815 Query 65942 CGCAATTGT--TCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACT 65999 | | |||| ||||| || | |||| |||||||| Sbjct 4814 CTC--TTGTAGTCGAA--CACACCGTTTT----------------------CCACAAACA 4781 Query 66000 TGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGA 66059 | || || || | ||| || | |||||| || || | ||| || || | || ||||| | Sbjct 4780 TAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCA 4721 Query 66060 CAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119 | |||| ||| | || ||| | || || || ||||| ||||| ||||| ||||| Sbjct 4720 TGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGATTCGACTTGC 4661 Query 66120 GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGA 66179 | || ||| |||||||| | |||| | || || ||||||| || | || | || Sbjct 4660 GGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGA 4601 Query 66180 TGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTAC-CGCCCTACCTTTGCGTTCGTAA 66238 | ||| ||| || | || || | || | ||| ||| | |||| ||||| Sbjct 4600 TAGCGAACCACAGCTGCTGAGCGTTGATTGT-CTTACGCGCACGTCCTTCCTTCTCGTAC 4542 Query 66239 TGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGT 66298 | ||| || || ||| || || ||||| ||| |||||| ||| | || Sbjct 4541 TTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTG 4482 Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358 ||||| | || ||| | |||| || || | ||| || |||||||| | | Sbjct 4481 GGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACC 4422 Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418 || || ||||| || | ||||| || || ||| |||| | ||||| || || |||| Sbjct 4421 CACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCTTACGCAGA 4362 Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 || |||||||| || | |||||| ||||| || |||| |||||| |||||||||||| | Sbjct 4361 TCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTG 4302 Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538 || || || || || ||||| || |||||||| | ||| || ||||||||||| || Sbjct 4301 CGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGG 4242 Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATC 66597 | | |||||||| ||| || |||||| ||| | | | | || || || || | Sbjct 4241 ATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGAT-GTAGCTGTTAGTGGCGCGGATGTT 4183 Query 66598 GTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGT 66657 ||| | | | | ||| ||||| || ||| || ||||| || || | | || Sbjct 4182 GTGCATACTGATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGT 4123 Query 66658 CCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTG 66717 | | ||||| ||||| |||||| ||| || | || ||| | || ||| | || Sbjct 4122 GTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGAAGACAACTG 4063 Query 66718 GGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGA 66777 || || ||| |||| |||||| || || || |||||||| ||| | | | || Sbjct 4062 AGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAACTTCTGCGA 4003 Query 66778 CATGTAATTGTACGTCTC 66795 |||| | ||||||||| Sbjct 4002 CATGAGCTCGTACGTCTC 3985 >seq4510 Length=93785 Score = 226 bits (250), Expect = 2e-54 Identities = 600/893 (67%), Gaps = 39/893 (4%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 |||||||| |||||||||| || | | || | |||| |||||||| || || || Sbjct 47474 CGTTTCGTGCTGTTCCCCATTCAGGAACACGAAGTGTGGCAGATGTACAAGAAAGCCGAG 47533 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGAT-TTGTCCAAAGACATGAATGACTGGGAGC- 61171 || ||||||||||||| |||||| |||| |||| || ||| | || |||||| ||| Sbjct 47534 GCCTCCTTCTGGACGGCTGAGGAGCTCGACCTTGTGCAC-GACCTCAAGGACTGG-AGCA 47591 Query 61172 -GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCG 61230 | | | || | || | ||| ||||| || || ||| | || ||||| || || Sbjct 47592 AGCTCACGGA-CAACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGT 47650 Query 61231 GACGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTC 61286 ||||||||||| || ||||| || || |||| ||| | || ||||| ||| | Sbjct 47651 GACGGTATCGTGAACGAGAACTTGGCCAT--GAAC--TTCAGCAACGAAGTGCAGGTGCC 47706 Query 61287 GGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTA 61346 ||||| ||||| ||||| ||||||||||| ||||| ||||| | ||||||||| | || Sbjct 47707 CGAGGCTCGTTGCTTCTATGGCTTCCAGATCGCCATTGAGAACATTCACTCGGAGGTCTA 47766 Query 61347 CAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCG-GAACGTGAACGAT-TGTTCAA 61403 | | ||||| || |||||||||| ||| ||| || ||| | || || | | Sbjct 47767 CTCACTGCTCATTGACACGTACATCAAGGACGCGATCGAGAA---GGACCATCTCCTGCG 47823 Query 61404 TGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-A 61462 |||||| ||||| || || || | | ||| || | ||||| |||| ||| | | Sbjct 47824 TGCCATTGAGACCATCCCTTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGA 47883 Query 61463 CC--AGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGT 61520 || || | | || | | || || ||||||| || || | || || || | Sbjct 47884 CCCGCGTGTATC--CT-CCTACCCAGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCAT 47940 Query 61521 ATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGG 61580 || ||| || || || | | ||||||||| | ||||| || || || |||||||| Sbjct 47941 CTTCTTCTCGGGCTCTTTCTGCTCCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGG 48000 Query 61581 TCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTG-CTG 61639 ||||| |||| || ||| | || || |||||||||||||| || || | ||| Sbjct 48001 TCTGAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCCTG 48060 Query 61640 --TTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGAT 61697 ||||| || || | | ||||| | | | | ||| ||||| ||||| Sbjct 48061 CCTTTTG-TACTC-----CAAGCTGGTCACCAAGCTGCCAGAGAGCCGTGTACACGAGAT 48114 Query 61698 TGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACT 61757 ||||||| || || || || || || ||| || |||| | | || || || Sbjct 48115 CATTCGTGACGCTGTGGTGATTGAGCACGAGTTTGTGCGTGACTCGCTCCCTGTGGAGCT 48174 Query 61758 CATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG-- 61815 || || ||||| | || || |||| ||||| ||||| || || || ||||||||| Sbjct 48175 GATTGGTATGAACTCTGCCCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCT 48234 Query 61816 TTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGAC 61875 | ||| || ||| || |||||| | | || ||||| ||||| | |||||| Sbjct 48235 CTACTCGCTT--GGTGTGTCCAAGATCTACCACGCTAAGAACCCTTTTGACTGGATGGAC 48292 Query 61876 ATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| || || | |||||||| || ||||||||||| ||||| ||||| || Sbjct 48293 ATGATCTCTCTCCAAGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTA 48345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397536558458960