Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509465.1_202013-12- 18] 6,489 sequences; 48,075,161 total letters Query= NC_027197.1 Length=3753 Score E Sequences producing significant alignments: (Bits) Value seq5839 1963 0.0 seq5227 327 3e-86 >seq5839 Length=9695 Score = 1963 bits (2176), Expect = 0.0 Identities = 1154/1195 (97%), Gaps = 2/1195 (0%) Strand=Plus/Plus Query 2559 GCCGTATGTTGAAACGCGATACGCGGGTATTGCAGACTACTATTCGAGAGATCATATCTT 2618 || |||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||| Sbjct 7006 GCAGTATGTTGAAACGCGATATGCGGATATCGCAGACTATTATTCGAGAGATCATATCTT 7065 Query 2619 TCGTCTGACCTCACCATACGATTGTTCGCAAGCCAATTCTGTTGTTGGCATTAACGCTGG 2678 ||||||||| ||||||||||||||||| ||||| ||| ||||| ||| |||||||||||| Sbjct 7066 TCGTCTGACTTCACCATACGATTGTTCTCAAGCAAATGCTGTTATTGACATTAACGCTGG 7125 Query 2679 TGCTGGTGTTACAAACATTACTCCTGAGAGCGCTGATGGAACGTTGCAATCGGCCCGGTG 2738 |||||||||||| || | ||||||||||||| |||||||||||||||||| |||||||| Sbjct 7126 TGCTGGTGTTACGAATGTCACTCCTGAGAGCGTTGATGGAACGTTGCAATCAGCCCGGTG 7185 Query 2739 GTTTAACTACTACTCCGGACTATACAACTACTATCATGTGGTATCGTGCCAGTACAATGT 2798 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7186 GTTTAACTACTACTCCGGACTATACAACTACTATCATGTGGTATCGTGCCAGTACAATGT 7245 Query 2799 GTTTGTGGAGAACTTATCTACAGAACCTTTGTGGGTATACCGACTCTTCTACAACGATGA 2858 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 7246 GTTTGTGGAGAACTTATCTACAGAACCTTTGTGGGTATACCGACTCTTTTACAACGATGA 7305 Query 2859 CCAGCCAAATACACTGGCTAGTAACGACGATATGCAGCTGTGGCCAAACACAATGTACCA 2918 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7306 CCAGCCAAATACACTGGCTAGTAACGACGATATGCAGCTGTGGCCAAACACAATGTACCA 7365 Query 2919 CTATCTCGATCGCCGTGCTCTTGCTATCACTGGAACTGGAAAAGTTGAAGTTGCAGGAGA 2978 |||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 7366 CTATCTTGATCGACGTGCTCTTGCTATCACTGCAACTGGAAAAGTTGAAGTTGCAGGAGA 7425 Query 2979 ACATCCTGATGACACCATCAATGCTGAGAACATCAACTCGACTGCCTTGATAGACAATTT 3038 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 7426 ACATCCTGATGACACCATCAATGCTGAGAACATCAACTCGACTGCCTTGCTGGACAATTT 7485 Query 3039 TGAGAATACGAACATGGTGGCAAACAATGGTGTATCCAAGTGTGTCATTTCTGGAGAATA 3098 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 7486 TGAGAATACGAACATGGTGGCCAACAATGGTGTATCCAAGTGTGTCATTTCTGGAGAATA 7545 Query 3099 CCGTACTGGTCAACACACAGGAGAAATTCGTTTGGATTCATCAGTTGAGAATTGGACGGC 3158 ||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 7546 TCGTACTGTTCAACACACAAGAGAAATTCGTTTGGATTCATCAGTTGAAAATTGGACGGC 7605 Query 3159 TACTAACACAAACCCTCTACTTCCGGAGAAACTATTGATTCGTGTGAAGCCTGTGAATGA 3218 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 7606 TACTAACACAAACCCTCTACTTCCGGAGAAACTATTGATTCGTGTGAAGCCGGTGAATGA 7665 Query 3219 TACAGTTCGTCTAAACAGTGCTACTAGTTCTGGTGACGATCTTAAGTACAAGATTGTTGT 3278 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 7666 TACAGTTCGTCTAAACAGTGCTACTAGTTCTGGTGACGATCTCAAGTACAAGATTGTTGT 7725 Query 3279 GAAGCTGAACTACCTTGTCGAGTTCAAGGAACTTCCTGTCGGTCTACGTTATCCAGTGCA 3338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7726 GAAGCTGAACTACCTTGTCGAGTTCAAGGAACTTCCTGTCGGTCTACGTTATCCAGTGCA 7785 Query 3339 AAGACAACCTTTGACTGTTACAATTGCTGCTGACGTGGAGTCTACGAACTAATGGTTCAC 3398 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 7786 GAGACAACCTTTGACTGTTACAATTGCTGCTGACGTGGAGTCTACAAACTAATGGTTCAC 7845 Query 3399 ACAAGAAGGCAAATCCGTCGTGCGCACGATGACTATCTTCAAGCGATACGGAATTCGGTT 3458 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 7846 ACAAGAAGGCAAATCCGTCGTGCGCATGACGACTATCTTCAAGCGATACGGAATTCGGTT 7905 Query 3459 GTACACCAACGACAACCAAGGCGTAACTTTTGGGATCAAGTGAGTCAACATGGATGGGAA 3518 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7906 GTACACCAACGACAACCAAGGCGTAACTTTTGGGATCAAGTGAGTCAACATGGATGGGAA 7965 Query 3519 CAGATGCTTCTAAATGCGAGACGTCAAGTGTTTCCTAAGAGATATAAACCAGAGGATACT 3578 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7966 CAGATGCTTTTAAACGCGAGACGTCAAGTGTTTCCTAAGAGATATAAACCAGAGGATACT 8025 Query 3579 GCGCATCGTCACCGTCTAGAAGGTGAGCAAGATAAGGATGTGTCTGTGCGTAGTTATACC 3638 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 8026 GCGCATCGTCACCGTCTAGAAGATGAGCAAGATAAGGATGTGTCTGTGCGTAGTT-TACC 8084 Query 3639 AGACGTAGTTTAAGAAAATGTATTTGATTTCTGATTGTGTTAAAGAATGTACAAGCGTAG 3698 |||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 8085 AGACGTAG-TTAAAAAAATTTATTTGATTTCTGATTGTGTTAAAGAATGTACAAGCGTAG 8143 Query 3699 CGCTGTACTTCTTTTCTATTAGTTTTACCCGGCGGTGGCAGAGCTCGAGCTCTAT 3753 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8144 CGCTGTACTTCTTTTCTATTAGTTTTACCCGGCGGTGGCAGAGCTCGAGCTCTAT 8198 Score = 605 bits (670), Expect = 7e-170 Identities = 502/611 (82%), Gaps = 4/611 (1%) Strand=Plus/Plus Query 1 ATAGAGCTCGAGCTCTGCCACCGCCGGGTAAAACTAATAGAAAAGAAGTACAGCGCTACG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6401 ATAGAGCTCGAGCTCTGCCACCGCCGGGTAAAACTAATAGAAAAGAAGTACAGCGCTACG 6460 Query 61 CTTGTACCTTCTTTCACACTATTCATACAATCATTCTTAAGACAAACAACAATCATTCAG 120 ||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 6461 CTTGTACATTCTTTAACACTATTCATACAATCATTCTTAAGATAAACAACAATCATTCTG 6520 Query 121 ATGAAATGAGACATGTATTATGTAGTTACACATCCATGAAATCGCGCATTTCCTTTTCCG 180 | |||||||||||||||||||||| ||| ||||||||||| ||||||||||| | ||| | Sbjct 6521 ACGAAATGAGACATGTATTATGTACTTAAACATCCATGAAGTCGCGCATTTCTTCTTCAG 6580 Query 181 TCAGCTCCAAGATGTCGATGACCGAGTCACGATCATCTTCATCTTCTTGGGTTGGCTCCA 240 ||| |||||||||||| |||| |||||||||||| ||||| |||||||| |||||||||| Sbjct 6581 TCAACTCCAAGATGTCAATGATCGAGTCACGATCGTCTTCGTCTTCTTGCGTTGGCTCCA 6640 Query 241 TCACGATGGCCAAGTCCGACGGAAATCCAGCATTCGCTTCCGCAATCAAATGATGAAACT 300 ||| ||| ||||| |||| ||| || |||||||| || || | |||| | | ||||||| Sbjct 6641 TCAAGATTGCCAAATCCGTCGGGAAGCCAGCATTGGCCTCAGTTATCAGACGCTGAAACT 6700 Query 301 CGTCATCTTCGAACGCACAGTACGGGGCCCAACGCGCACGGGCCTCCGCGTTATTGATGA 360 | |||||||| |||| || ||||| |||||||| |||||||| || || || ||||||| Sbjct 6701 CTTCATCTTCAAACGAGCAATACGGTGCCCAACGAGCACGGGCTTCAGCATTGTTGATGA 6760 Query 361 AATATTCCCTCGCGATCAGATCCATCATCTCAATCG--CTGCATGCAAATCTCGCAGCTC 418 | || || ||||| || | |||||||||||| || |||| ||||||| || || Sbjct 6761 AGTACTCTCTCGCAATGATGTCCATCATCTCACACGCACTGC--GCAAATCAACTAGTTC 6818 Query 419 TTGCTGCATGCGACCGTTCAGTCCTCCCGCCATGTTGTACAACGTGTTCAGGCGAGTAAG 478 | |||| ||| ||| || || || ||||| ||| | | ||| || || ||||| || Sbjct 6819 ACGTTGCAAACGAGTGTTGAGACCCCCAGCCATATTGAATAGCGTATTGAGACGAGTTAG 6878 Query 479 GCGTAGACGCAACGCCTGCGCTTCGTTCAAGGCCGTACGTAGCTTGTCATGGAGCGCCTT 538 ||||| || | ||| |||||||| |||| || | || |||||| | || || || Sbjct 6879 ACGTAGGCGAAGCGCTTGCGCTTCATTCACCGCACTGCGAAGCTTGCTTAGTAGAGCGTT 6938 Query 539 GTTCTCTTCGACGATAAAACTCTCGACGAGTTCCGTCACGATGTTATGGTGTTGTTCGTG 598 ||| ||||| ||||| |||||||| |||||||| || |||||||| || | |||| ||| Sbjct 6939 GTTTTCTTCCACGATGAAACTCTCCACGAGTTCAGTGACGATGTTGTGTTCCTGTTGGTG 6998 Query 599 CGCCATGGCAG 609 ||||||||||| Sbjct 6999 CGCCATGGCAG 7009 Score = 143 bits (158), Expect = 6e-31 Identities = 81/82 (99%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 3672 ATTGTGTTAAAGAATGTACAAGCGTAGCGCTGTACTTCTTTTCTATTAGTTTTACCCGGC 3731 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6482 ATAGTGTTAAAGAATGTACAAGCGTAGCGCTGTACTTCTTTTCTATTAGTTTTACCCGGC 6423 Query 3732 GGTGGCAGAGCTCGAGCTCTAT 3753 |||||||||||||||||||||| Sbjct 6422 GGTGGCAGAGCTCGAGCTCTAT 6401 Score = 134 bits (148), Expect = 3e-28 Identities = 79/82 (96%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 1 ATAGAGCTCGAGCTCTGCCACCGCCGGGTAAAACTAATAGAAAAGAAGTACAGCGCTACG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 8198 ATAGAGCTCGAGCTCTGCCACCGCCGGGTAAAACTAATAGAAAAGAAGTACAGCGCTACG 8139 Query 61 CTTGTACCTTCTTTCACACTAT 82 ||||||| |||||| |||| || Sbjct 8138 CTTGTACATTCTTTAACACAAT 8117 Score = 84.2 bits (92), Expect = 5e-13 Identities = 74/89 (83%), Gaps = 5/89 (6%) Strand=Plus/Plus Query 1 ATAGAGCTCGAGCTC--TGCCACCGCCGGG--TAAAACTAATAGAAAAGAAGTACAGCGC 56 ||||||||||||||| ||||||||||| | |||||| |||||||||||||||| |||| Sbjct 8225 ATAGAGCTCGAGCTCCATGCCACCGCCGTGACTAAAAC-AATAGAAAAGAAGTACGGCGC 8283 Query 57 TACGCTTGTACCTTCTTTCACACTATTCA 85 |||||| |||||||||| | |||| Sbjct 8284 TACGCTGCCGTCTTCTTTCACCATCTTCA 8312 Score = 78.8 bits (86), Expect = 2e-11 Identities = 59/66 (89%), Gaps = 5/66 (8%) Strand=Plus/Minus Query 3692 AGCGTAGCGCTGTACTTCTTTTCTATTAGTTTTA--CCCGGCGGTGGCA--GAGCTCGAG 3747 |||||||||| |||||||||||||||| |||||| | ||||||||||| ||||||||| Sbjct 8289 AGCGTAGCGCCGTACTTCTTTTCTATT-GTTTTAGTCACGGCGGTGGCATGGAGCTCGAG 8231 Query 3748 CTCTAT 3753 |||||| Sbjct 8230 CTCTAT 8225 >seq5227 Length=6359 Score = 327 bits (362), Expect = 3e-86 Identities = 923/1390 (66%), Gaps = 67/1390 (5%) Strand=Plus/Plus Query 831 TCTCCAACAACCATGGCCCCTCTTGTTCCTTTCCACACTATGGACCGTCAGTGGGACGCA 890 |||| |||||||| | ||| | || || |||||||| ||||| | ||| |||||||| Sbjct 1337 TCTCGAACAACCAAGCAACCTAT-GTCCCGTTCCACACCATGGAGCATCAATGGGACGCT 1395 Query 891 CGCTTCAATGTACCTACCGATGAAGATCTCGAGGCTCTCCTTCTCAATG-TCAAGAGCGA 949 || ||||| |||| || || |||||||| | | || | || | ||||| || Sbjct 1396 CGTTTCAA-GTACTGACAACGGAGGATCTCGACAATGTTCT-CGCAGCGATCAAGTATGA 1453 Query 950 AGTTGACCAAGGAAAGTTCCAATACTGCCTCGTCGGTGGAGTAGAGATCGGTGATCGTCC 1009 | | ||| | ||||||| ||| ||||| ||||| || ||||| ||||| || || Sbjct 1454 GGCTAGTCAAAGCAAGTTCCCTTACGTTCTCGTAGGTGGCGTCGAGATTGGTGACCGCCC 1513 Query 1010 TTACCAAACGGACTACCTCATCAAGCACGTGCACGTAGCTCTGGTGTACAATAACCGCGT 1069 || || | ||||| || |||||||||| || || || | ||| || || || Sbjct 1514 GTATCAGAACGACTATCTGCTCAAGCACGTCCATTGCGCATTGATCTACGCGAATCGAGT 1573 Query 1070 CTCGAAGAACTCCGTGCTGAAGAATCTTCAAATCAAGCAAGGCAATGGCTATTACCTTGT 1129 ||| || | |||| | || |||||||| | | || |||||| | || || || || Sbjct 1574 CTCCAAAAGCTCCATCCTCAAGAATCTCAATGTGAAACAAGGCCTTTATTACTATCTCGT 1633 Query 1130 TCCACGTAACCGTGATCTGCCTATCCAAGGCTGGATCGATCATCAC-ACCAAGTCAAA-- 1186 ||||| || | || | || | | |||||| || | || |||| |||||| Sbjct 1634 CCCACGCAAGGGCGACC---CTTTGTATT-CTGGATG--TCGTGACCACCATGTCAAACC 1687 Query 1187 --AACGAAAA-TCAACGAGGACTTCAAGCTGTATGAGTACGGCACTCTACCTGCTGACAA 1243 || ||||| | ||| || | | ||| | || | || | || || ||||| Sbjct 1688 ACAAGGAAAAGTGAACAGCGAGTACGTGCTTTTCGAACAAGGAATGCTTCCGTAAGACAA 1747 Query 1244 ACCCAATATCTCTGCTCAAGTGACCAAGAGATCGCCAGAGGAAAAGAAGAGAAAACTTGA 1303 | | || | | |||| | | || | |||| ||||| | ||||| || Sbjct 1748 AGA-AGTAACGGTTATCAAACGCTCT-GAATT----AGAG---AAGAAACGCAAACTCGA 1798 Query 1304 CGATGTCATCAAGGAGATGCGAGGCATGATCGAAGAAGG--ACGCGAAGAGGAAGCCTTC 1361 |||||| |||| |||||||| | ||| |||| ||||| | || |||| |||||| Sbjct 1799 CGATGTAATCAGAGAGATGCGCGCGATGCTCGATGAAGGGAAAAAGATAAGGA-GCCTTC 1857 Query 1362 ACCAAGTTTCCTCGAAACTA-CTTGACCTATGGAGAAAAGCTGAAAGCTATGATCTCACA 1420 |||||||||| ||| ||| ||| | | || ||||| | ||||| ||| | || Sbjct 1858 GCCAAGTTTCCCAGAAGCTATCTTCATTTC-GGCGAAAAAATCAAAGCCATGCTTAACCA 1916 Query 1421 GCGTCGTGACTTTTTCAAGAGCAACGGTGACCCTCACATCTGGCTTACTGGTACTCCTGG 1480 ||||| ||||| |||||| ||| || |||| ||||| ||||||| ||| ||||| Sbjct 1917 ACGTCGCGACTTCTTCAAGTCCAAAGGACACCCACACATTTGGCTTAAAGGTCTGCCTGG 1976 Query 1481 TTCTGGCAAGTCTGCCATCTTGCAGGTCATCTATCCTGCGTATTACAACAAGAATCTGGA 1540 ||| || ||||||| | ||||| |||| || | || |||||||||| ||||| Sbjct 1977 AAGTGGTAAAAGTGCCATCCTTCAGGTGGTCTACCCAGACTACTACAACAAGAGCCTGGA 2036 Query 1541 CAACCGTTTCTTCGACTTGTACCAGCCAAAAGTGCACACGCACATGCTTCTTCAAGATGT 1600 || ||||||| | ||| | | | | || |||||||||||||||| || | |||||||| Sbjct 2037 CACCCGTTTCATGGACCTATTCAATCCCAAAGTGCACACGCACACACTCTTGCAAGATGT 2096 Query 1601 CGATCACACGACGGTTGAAAAGTTGGGAGTCCAGTTCCTAAAGACCATCTGTGACGAAGC 1660 ||||||| || || ||| | || || ||||| || || || | |||| ||||| Sbjct 2097 TGATCACAGAGTTGTCGAGAAGCTCGGTGTACAGTTTCTCAAAACACTATGTGGCGAAGT 2156 Query 1661 TGGTTTCCCAGTTGACCAAAAGTACAAGACGCCGCAACTGGCTCGTACCACTG-TCTTGG 1719 || ||| || | ||||| |||| |||| || ||| | ||| | || || | || | | Sbjct 2157 TGTTTTTCCTTTGGACCAGAAGTTCAAGGCGGTGCAGCCTGCTAGGACGACGGTTCGTCG 2216 Query 1720 TCTCTTCCAACTTCACCATCAACGATGTGATTCCGGAAGACATGCCAGGACGCAATGAAA 1779 | | || ||||| || ||| || |||| | || ||||||||||| | || | || | Sbjct 2217 TTTTGTCGAACTTTACGATCGACAATGTTCTCCCAGAAGACATGCCTGACCGGACAGAGA 2276 Query 1780 ATCTAACGGCTCTGCGTCGTCGCTTCTATGAAGTGAACGTTCGTGTTCTTT-TGCAGATA 1838 |||| | || ||||||||||||||| ||||| || || | |||| | || || Sbjct 2277 ATCTGATTGCGTTGCGTCGTCGCTTCTGGGAAGTAGACAGCCG-CTCCTTTCTACAAATC 2335 Query 1839 CTCGGACTGAAGCTTCTGTCGAAGTACGAACTGAACGGCTTGAAACGC--GTGGGAAATC 1896 ||||| | ||||| || |||||||| |||| | ||| | | |||| | Sbjct 2336 CTCGGTGTCAAGCTACTTGATAAGTACGAGTTGAA------GTAACCCAAGAAAGAAAGC 2389 Query 1897 AA----GATCCAACCAAACTCTTCATGTCGTGGGATTACACTCGTGACATTCCCACTGGA 1952 || |||||| ||| |||| || ||||||| || |||||| ||||| || | Sbjct 2390 AACATGGATCCACGCAAGATCTTTATCACGTGGGACTATGGTCGTGATATTCCAACAGCC 2449 Query 1953 GAGTCGTTGAAGACTGCCAAGGAATACCAGCAGATCATCAAGGATCACTACTACGGAACG 2012 || | | |||||| ||| ||||| ||||| | ||| ||||| | | | Sbjct 2450 GAAGAACTCCCATCAGCCAAGACGCTCCAAGAGATCGTCAAGAACCACCACTACAGTAAG 2509 Query 2013 AACACTTCGCCTCACTCGAGTCAGTAAGTAAAAGACGATGTGGGACTTAACACTGCCAGG 2072 ||| || || |||| | | ||||||||||||| || ||||| Sbjct 2510 -ACAGTT-GC-------------GTAATT-----GCAATGTGGGACTTAAGTCTCCCAGG 2549 Query 2073 ATACAAGTATCTAGGACCAGGAAACAAACTTGACAAGGGAGAATCAAATAACGAGAATGA 2132 || | ||||||||| |||||||||| ||| | || || | | | || || || || Sbjct 2550 CTATAGGTATCTAGGCCCAGGAAACATACTCAATAAATGACCACCTGAAAATGAAAACGA 2609 Query 2133 CAGAGTTGCTTTAGCACATGATATTGCTTATGAT-TTCTTGGaaaaaaaaGGATTCAATC 2191 ||| ||||| | || |||||||| || ||| ||||| || |||| | ||| ||||| Sbjct 2610 TGAAGTGGCTTTGGTTCACGATATTGCGTACGATATTCTT-GAGAAAATAAGATACAATC 2668 Query 2192 CATATACACA 2201 |||| ||||| Sbjct 2669 CATACACACA 2678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11896755586430