Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12-
18] 6,813 sequences; 47,449,104 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq1924 98.7 3e-18
seq2158 86.0 2e-14
seq5069 84.2 7e-14
>seq1924
Length=1259
Score = 98.7 bits (108), Expect = 3e-18
Identities = 68/76 (89%), Gaps = 2/76 (3%)
Strand=Plus/Minus
Query 422 CCATTCGCAGTTTCACTGTATAGAT--TGCTTATACTTAGACATGCATGGCTTAATCTTT 479
|||||||||||||||| ||| | | || ||||||||||||||||||||||||||||||
Sbjct 76 CCATTCGCAGTTTCACAGTACAAAACGTGTTTATACTTAGACATGCATGGCTTAATCTTT 17
Query 480 GAGACAAGCATATGAC 495
||||||||| ||||||
Sbjct 16 GAGACAAGCGTATGAC 1
>seq2158
Length=4725
Score = 86.0 bits (94), Expect = 2e-14
Identities = 91/119 (76%), Gaps = 6/119 (5%)
Strand=Plus/Minus
Query 160 TTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAAT 219
||||||||| || |||||||||||| |||||||||||| |||| |||||||||||||||
Sbjct 164 TTACCCGTTAATGCCATGGTAGGCCCATATCCTACCATCCAAAGCTGATAGGGCAGAAAT 105
Query 220 TTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA 278
| | || ||||| || ||| ||||| || ||||||||||| ||| ||
Sbjct 104 TCAATCGATTTATCGC--GCAAAAG----CGCGATCCGCACAGTTATTATGACTCAACA 52
>seq5069
Length=31895
Score = 84.2 bits (92), Expect = 7e-14
Identities = 75/94 (80%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403
||||||||| ||||| ||||||| ||||| ||| | |||||||||| ||| | | ||
Sbjct 27855 GCATGTATTTGCTCTTGAATTACTACGGTAATCGTAGCAGTAAGGTACCATCGAGTGGAC 27914
Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCAC 437
|||| |||| | |||||||| |||||||||||
Sbjct 27915 TATAATTGATATGTTGAGCCATACGCAGTTTCAC 27948
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510297096448
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |