Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4890 259 4e-64 seq4811 226 2e-54 >seq4890 Length=10138 Score = 259 bits (286), Expect = 4e-64 Identities = 1093/1698 (64%), Gaps = 71/1698 (4%) Strand=Plus/Minus Query 65123 TAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTT 65182 |||||||||||||||||||| || |||||| || || ||||| || | | | || Sbjct 5641 TAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACG-TCAGCTT 5583 Query 65183 GCATA-ATTCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACC 65241 | | | |||| ||||| | || || ||||||||||||||||| ||| ||| || Sbjct 5582 ACTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATATAAGCGCC 5523 Query 65242 ACGATCTGCAGCCATGTCAATGATACGACGTCCCGAT--ATCTCCCAGACGGTCTTGTAC 65299 ||| || || | || ||| | || || | | | | | |||||||| || ||||||||| Sbjct 5522 ACGGTCAGCCGACAGGTCCA-GA-ACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTAC 5465 Query 65300 AGGCGACGTACC-TCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGA-CGTGCAA 65357 | | || | ||| ||||| |||| | | ||| || || |||| | | | || Sbjct 5464 TT-CTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACAGAGCCACCATCATTCAG 5406 Query 65358 TAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGT 65417 ||| ||||||| | | | ||| | || | |||||||| | | | || | Sbjct 5405 -AATCTGATTACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATCAGAT 5347 Query 65418 GACGATTGATGAC--TTG-GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACG 65474 || ||| | || | | |||||| || | || ||||||||| || |||||||||| Sbjct 5346 -AC--TTGTTAACGATCGTGAACTCACCAGCCAACACACGACGGTTGTACATGTTGGACG 5290 Query 65475 TGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGG 65534 || || || | || || ||||||| || || || || || || || || ||||||| Sbjct 5289 TGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGG 5230 Query 65535 GAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCAATGTTGTGACGC---AATTCGT 65591 | || |||| || ||||| || | |||| || |||| || | | | || Sbjct 5229 GTGCAACCAGCAGCGAGTTACGGAGACCGTG---TTTAATGACGTCATCTTTTAGTGCGG 5173 Query 65592 CCCAGTTCCACATCG--GTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGT 65649 |||||||||| | | | | | || ||| |||||| || || | | | Sbjct 5172 CCCAGTTCCAAAGCCCAGATGAAGGTGTG-----ACGCCCCACATGTCGAACTGGAAGAT 5118 Query 65650 TCCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTG 65709 || |||||||||| || || |||| | ||||| ||| ||| |||||| | Sbjct 5117 ACCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAATCTC 5058 Query 65710 ACAGCTG-GTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCAC 65768 || | ||||| | || ||||| || || |||||||| ||| || | ||||| Sbjct 5057 -CATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCAC 4999 Query 65769 GTGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGA 65827 | || | ||||||| ||| | || ||| |||| || | || |||||||| || Sbjct 4998 GAGCTTGCGGGCTCTCGAACG-CGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGG 4940 Query 65828 ACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAG 65887 || |||||||| ||||||||||| |||| ||||| | ||||| | ||||| || Sbjct 4939 ACGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCCTCTGCAACAGGATAA 4880 Query 65888 TAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGA-----TAC-GT 65941 ||||||| ||||| | || | ||||| || | ||| | || | ||| || Sbjct 4879 TAATTGACGTCGATGACCTTGTTGAGGTTGCGCGTGATCACCTTGACCACCTCATACAGT 4820 Query 65942 CGCAATTGT--TCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACT 65999 | | |||| ||||| || | |||| |||||||| Sbjct 4819 CTC--TTGTAGTCGAA--CACACCGTTTT----------------------CCACAAACA 4786 Query 66000 TGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGA 66059 | || || || | ||| || | |||||| || || | ||| || || | || ||||| | Sbjct 4785 TAGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCA 4726 Query 66060 CAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGC 66119 | |||| ||| | || ||| | || || || ||||| ||||| || || ||||| Sbjct 4725 TGACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGGTTCGACTTGC 4666 Query 66120 GATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGA 66179 | || ||| |||||||| | |||| | || || ||||||| || | || | || Sbjct 4665 GGTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGA 4606 Query 66180 TGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTAC-CGCCCTACCTTTGCGTTCGTAA 66238 | ||| ||| || | || || | || | ||| ||| | |||| ||||| Sbjct 4605 TAGCGAACCACAGCTGCTGAGCGTTGATTGT-CTTACGCGCACGTCCTTCCTTCTCGTAC 4547 Query 66239 TGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGT 66298 | ||| || || ||| || || ||||| ||| |||||| ||| | || Sbjct 4546 TTTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTG 4487 Query 66299 GGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATC 66358 ||||| | || ||| | |||| || || | ||| || |||||||| | | Sbjct 4486 GGACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACC 4427 Query 66359 CAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG 66418 || || ||||| || | ||||| || || ||| |||| | ||||| || || |||| Sbjct 4426 CACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCTTACGCAGA 4367 Query 66419 TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATA 66478 || |||||||| || | |||||| ||||| || |||| |||||| |||||||||||| | Sbjct 4366 TCCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTG 4307 Query 66479 CGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538 || || || || || ||||| || |||||||| | ||| || ||||||||||| || Sbjct 4306 CGCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGG 4247 Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATC 66597 | | |||||||| ||| || |||||| ||| | | | | || || || || | Sbjct 4246 ATAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGAT-GTAGCTGTTAGTGGCGCGGATGTT 4188 Query 66598 GTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGT 66657 ||| | | | | ||| ||||| || ||| || ||||| || || | | || Sbjct 4187 GTGCATACTGATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGT 4128 Query 66658 CCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTG 66717 | | ||||| ||||| |||||| ||| || | || ||| | || ||| | || Sbjct 4127 GTCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAACAAGAAGACAACTG 4068 Query 66718 GGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGA 66777 || || ||| |||| |||||| || || || |||||||| ||| | | | || Sbjct 4067 AGGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAACTTCTGCGA 4008 Query 66778 CATGTAATTGTACGTCTC 66795 |||| | ||||||||| Sbjct 4007 CATGAGCTCGTACGTCTC 3990 >seq4811 Length=93528 Score = 226 bits (250), Expect = 2e-54 Identities = 600/893 (67%), Gaps = 39/893 (4%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 |||||||| |||||||||| || | | || | |||| |||||||| || || || Sbjct 47272 CGTTTCGTGCTGTTCCCCATTCAGGAACACGAAGTGTGGCAGATGTACAAGAAAGCCGAG 47331 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGAT-TTGTCCAAAGACATGAATGACTGGGAGC- 61171 || ||||||||||||| |||||| |||| |||| || ||| | || |||||| ||| Sbjct 47332 GCCTCCTTCTGGACGGCTGAGGAGCTCGACCTTGTGCAC-GACCTCAAGGACTGG-AGCA 47389 Query 61172 -GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCG 61230 | | | || | || | ||| ||||| || || ||| | || ||||| || || Sbjct 47390 AGCTCACGGA-CAACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGT 47448 Query 61231 GACGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTC 61286 ||||||||||| || ||||| || || |||| ||| | || ||||| ||| | Sbjct 47449 GACGGTATCGTGAACGAGAACTTGGCCAT--GAAC--TTCAGCAACGAAGTGCAGGTGCC 47504 Query 61287 GGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTA 61346 ||||| ||||| ||||| ||||||||||| ||||| ||||| | ||||||||| | || Sbjct 47505 CGAGGCTCGTTGCTTCTATGGCTTCCAGATCGCCATTGAGAACATTCACTCGGAGGTCTA 47564 Query 61347 CAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCG-GAACGTGAACGAT-TGTTCAA 61403 | | ||||| || |||||||||| ||| ||| || ||| | || || | | Sbjct 47565 CTCACTGCTCATTGACACGTACATCAAGGACGCGATCGAGAA---GGACCATCTCCTGCG 47621 Query 61404 TGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-A 61462 |||||| ||||| || || || | | ||| || | ||||| |||| ||| | | Sbjct 47622 TGCCATTGAGACCATCCCTTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGA 47681 Query 61463 CC--AGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGT 61520 || || | | || | | || || ||||||| || || | || || || | Sbjct 47682 CCCGCGTGTATC--CT-CCTACCCGGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCAT 47738 Query 61521 ATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGG 61580 || ||| || || || | | ||||||||| | ||||| || || || |||||||| Sbjct 47739 CTTCTTCTCGGGCTCTTTCTGCTCCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGG 47798 Query 61581 TCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTG-CTG 61639 ||||| |||| || ||| | || || |||||||||||||| || || | ||| Sbjct 47799 TCTGAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCCTG 47858 Query 61640 --TTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGAT 61697 ||||| || || | | ||||| | | | | ||| ||||| ||||| Sbjct 47859 CCTTTTG-TACTC-----CAAGCTGGTCACCAAGCTGCCAGAGAGCCGTGTACACGAGAT 47912 Query 61698 TGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACT 61757 ||||||| || || || || || || ||| || |||| | | || || || Sbjct 47913 CATTCGTGACGCTGTGGTGATTGAGCACGAGTTTGTGCGTGACTCGCTCCCTGTGGAGCT 47972 Query 61758 CATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG-- 61815 || || ||||| | || || |||| ||||| ||||| || || || ||||||||| Sbjct 47973 GATTGGTATGAACTCTGCCCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCT 48032 Query 61816 TTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGAC 61875 | ||| || ||| || |||||| | | || ||||| ||||| | |||||| Sbjct 48033 CTACTCGCTT--GGTGTGTCCAAGATCTACCACGCTAAGAACCCTTTTGACTGGATGGAC 48090 Query 61876 ATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| || || | |||||||| || ||||||||||| ||||| ||||| || Sbjct 48091 ATGATCTCTCTCCAAGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTA 48143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397534988562320