Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509485.1_202013-12- 18] 6,813 sequences; 47,449,104 total letters Query= NC_027197.1 Length=3753 Score E Sequences producing significant alignments: (Bits) Value seq6185 1959 0.0 seq6189 327 3e-86 >seq6185 Length=11586 Score = 1959 bits (2172), Expect = 0.0 Identities = 1153/1195 (96%), Gaps = 2/1195 (0%) Strand=Plus/Plus Query 2559 GCCGTATGTTGAAACGCGATACGCGGGTATTGCAGACTACTATTCGAGAGATCATATCTT 2618 || |||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||| Sbjct 1800 GCAGTATGTTGAAACGCGATATGCGGATATCGCAGACTATTATTCGAGAGATCATATCTT 1859 Query 2619 TCGTCTGACCTCACCATACGATTGTTCGCAAGCCAATTCTGTTGTTGGCATTAACGCTGG 2678 ||||||||| ||||||||||||||||| ||||| ||| ||||| ||| |||||||||||| Sbjct 1860 TCGTCTGACTTCACCATACGATTGTTCTCAAGCAAATGCTGTTATTGACATTAACGCTGG 1919 Query 2679 TGCTGGTGTTACAAACATTACTCCTGAGAGCGCTGATGGAACGTTGCAATCGGCCCGGTG 2738 |||||||||||| || | ||||||||||||| |||||||||||||||||| |||||||| Sbjct 1920 TGCTGGTGTTACGAATGTCACTCCTGAGAGCGTTGATGGAACGTTGCAATCAGCCCGGTG 1979 Query 2739 GTTTAACTACTACTCCGGACTATACAACTACTATCATGTGGTATCGTGCCAGTACAATGT 2798 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1980 GTTTAACTACTACTCCGGACTATACAACTACTATCATGTGGTATCGTGCCAGTACAATGT 2039 Query 2799 GTTTGTGGAGAACTTATCTACAGAACCTTTGTGGGTATACCGACTCTTCTACAACGATGA 2858 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 2040 GTTTGTGGAGAACTTATCTACAGAACCTTTGTGGGTATACCGACTCTTTTACAACGATGA 2099 Query 2859 CCAGCCAAATACACTGGCTAGTAACGACGATATGCAGCTGTGGCCAAACACAATGTACCA 2918 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2100 CCAGCCAAATACACTGGCTAGTAACGACGATATGCAGCTGTGGCCAAACACAATGTACCA 2159 Query 2919 CTATCTCGATCGCCGTGCTCTTGCTATCACTGGAACTGGAAAAGTTGAAGTTGCAGGAGA 2978 |||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 2160 CTATCTTGATCGACGTGCTCTTGCTATCACTGCAACTGGAAAAGTTGAAGTTGCAGGAGA 2219 Query 2979 ACATCCTGATGACACCATCAATGCTGAGAACATCAACTCGACTGCCTTGATAGACAATTT 3038 ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 2220 ACATCCTGATGACACCATCAATGCTGAGAACATCAACTCGACTGCCTTGCTGGACAATTT 2279 Query 3039 TGAGAATACGAACATGGTGGCAAACAATGGTGTATCCAAGTGTGTCATTTCTGGAGAATA 3098 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2280 TGAGAATACGAACATGGTGGCCAACAATGGTGTATCCAAGTGTGTCATTTCTGGAGAATA 2339 Query 3099 CCGTACTGGTCAACACACAGGAGAAATTCGTTTGGATTCATCAGTTGAGAATTGGACGGC 3158 ||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||| Sbjct 2340 TCGTACTGTTCAACACACAAGAGAAATTCGTTTGGATTCATCAGTTGAAAATTGGACGGC 2399 Query 3159 TACTAACACAAACCCTCTACTTCCGGAGAAACTATTGATTCGTGTGAAGCCTGTGAATGA 3218 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2400 TACTAACACAAACCCTCTACTTCCGGAGAAACTATTGATTCGTGTGAAGCCGGTGAATGA 2459 Query 3219 TACAGTTCGTCTAAACAGTGCTACTAGTTCTGGTGACGATCTTAAGTACAAGATTGTTGT 3278 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2460 TACAGTTCGTCTAAACAGTGCTACTAGTTCTGGTGACGATCTCAAGTACAAGATTGTTGT 2519 Query 3279 GAAGCTGAACTACCTTGTCGAGTTCAAGGAACTTCCTGTCGGTCTACGTTATCCAGTGCA 3338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2520 GAAGCTGAACTACCTTGTCGAGTTCAAGGAACTTCCTGTCGGTCTACGTTATCCAGTGCA 2579 Query 3339 AAGACAACCTTTGACTGTTACAATTGCTGCTGACGTGGAGTCTACGAACTAATGGTTCAC 3398 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 2580 GAGACAACCTTTGACTGTTACAATTGCTGCTGACGTGGAGTCTACAAACTAATGGTTCAC 2639 Query 3399 ACAAGAAGGCAAATCCGTCGTGCGCACGATGACTATCTTCAAGCGATACGGAATTCGGTT 3458 ||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||| Sbjct 2640 ACAAGAAGGCAAATCCGTCTTGCGCATGACGACTATCTTCAAGCGATACGGAATTCGGTT 2699 Query 3459 GTACACCAACGACAACCAAGGCGTAACTTTTGGGATCAAGTGAGTCAACATGGATGGGAA 3518 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2700 GTACACCAACGACAACCAAGGCGTAACTTTTGGGATCAAGTGAGTCAACATGGATGGGAA 2759 Query 3519 CAGATGCTTCTAAATGCGAGACGTCAAGTGTTTCCTAAGAGATATAAACCAGAGGATACT 3578 ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2760 CAGATGCTTTTAAACGCGAGACGTCAAGTGTTTCCTAAGAGATATAAACCAGAGGATACT 2819 Query 3579 GCGCATCGTCACCGTCTAGAAGGTGAGCAAGATAAGGATGTGTCTGTGCGTAGTTATACC 3638 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 2820 GCGCATCGTCACCGTCTAGAAGATGAGCAAGATAAGGATGTGTCTGTGCGTAGTT-TACC 2878 Query 3639 AGACGTAGTTTAAGAAAATGTATTTGATTTCTGATTGTGTTAAAGAATGTACAAGCGTAG 3698 |||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 2879 AGACGTAG-TTAAAAAAATTTATTTGATTTCTGATTGTGTTAAAGAATGTACAAGCGTAG 2937 Query 3699 CGCTGTACTTCTTTTCTATTAGTTTTACCCGGCGGTGGCAGAGCTCGAGCTCTAT 3753 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2938 CGCTGTACTTCTTTTCTATTAGTTTTACCCGGCGGTGGCAGAGCTCGAGCTCTAT 2992 Score = 610 bits (676), Expect = 2e-171 Identities = 503/611 (82%), Gaps = 4/611 (1%) Strand=Plus/Plus Query 1 ATAGAGCTCGAGCTCTGCCACCGCCGGGTAAAACTAATAGAAAAGAAGTACAGCGCTACG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1195 ATAGAGCTCGAGCTCTGCCACCGCCGGGTAAAACTAATAGAAAAGAAGTACAGCGCTACG 1254 Query 61 CTTGTACCTTCTTTCACACTATTCATACAATCATTCTTAAGACAAACAACAATCATTCAG 120 ||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 1255 CTTGTACATTCTTTAACACTATTCATACAATCATTCTTAAGATAAACAACAATCATTCTG 1314 Query 121 ATGAAATGAGACATGTATTATGTAGTTACACATCCATGAAATCGCGCATTTCCTTTTCCG 180 | |||||||||||||||||||||| ||| ||||||||||| ||||||||||| | ||| | Sbjct 1315 ACGAAATGAGACATGTATTATGTACTTAAACATCCATGAAGTCGCGCATTTCTTCTTCAG 1374 Query 181 TCAGCTCCAAGATGTCGATGACCGAGTCACGATCATCTTCATCTTCTTGGGTTGGCTCCA 240 ||| |||||||||||| |||| |||||||||||| ||||| |||||||| |||||||||| Sbjct 1375 TCAACTCCAAGATGTCAATGATCGAGTCACGATCGTCTTCGTCTTCTTGCGTTGGCTCCA 1434 Query 241 TCACGATGGCCAAGTCCGACGGAAATCCAGCATTCGCTTCCGCAATCAAATGATGAAACT 300 ||| ||| ||||| |||| ||| ||||||||||| || || | |||| | | ||||||| Sbjct 1435 TCAAGATTGCCAAATCCGTCGGGAATCCAGCATTGGCCTCAGTTATCAGACGCTGAAACT 1494 Query 301 CGTCATCTTCGAACGCACAGTACGGGGCCCAACGCGCACGGGCCTCCGCGTTATTGATGA 360 | |||||||| |||| || ||||| |||||||| |||||||| || || || ||||||| Sbjct 1495 CTTCATCTTCAAACGAGCAATACGGTGCCCAACGAGCACGGGCTTCAGCATTGTTGATGA 1554 Query 361 AATATTCCCTCGCGATCAGATCCATCATCTCAATCG--CTGCATGCAAATCTCGCAGCTC 418 | || || ||||| || | |||||||||||| || |||| ||||||| || || Sbjct 1555 AGTACTCTCTCGCAATGATGTCCATCATCTCACACGCACTGC--GCAAATCAACTAGTTC 1612 Query 419 TTGCTGCATGCGACCGTTCAGTCCTCCCGCCATGTTGTACAACGTGTTCAGGCGAGTAAG 478 | |||| ||| ||| || || || ||||| ||| | | ||| || || ||||| || Sbjct 1613 ACGTTGCAAACGAGTGTTGAGACCCCCAGCCATATTGAATAGCGTATTGAGACGAGTTAG 1672 Query 479 GCGTAGACGCAACGCCTGCGCTTCGTTCAAGGCCGTACGTAGCTTGTCATGGAGCGCCTT 538 ||||| || | ||| |||||||| |||| || | || |||||| | || || || Sbjct 1673 ACGTAGGCGAAGCGCTTGCGCTTCATTCACCGCACTGCGAAGCTTGCTTAGTAGAGCGTT 1732 Query 539 GTTCTCTTCGACGATAAAACTCTCGACGAGTTCCGTCACGATGTTATGGTGTTGTTCGTG 598 ||| ||||| ||||| |||||||| |||||||| || |||||||| || | |||| ||| Sbjct 1733 GTTTTCTTCCACGATGAAACTCTCCACGAGTTCAGTGACGATGTTGTGTTCCTGTTGGTG 1792 Query 599 CGCCATGGCAG 609 ||||||||||| Sbjct 1793 CGCCATGGCAG 1803 Score = 143 bits (158), Expect = 6e-31 Identities = 81/82 (99%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 3672 ATTGTGTTAAAGAATGTACAAGCGTAGCGCTGTACTTCTTTTCTATTAGTTTTACCCGGC 3731 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1276 ATAGTGTTAAAGAATGTACAAGCGTAGCGCTGTACTTCTTTTCTATTAGTTTTACCCGGC 1217 Query 3732 GGTGGCAGAGCTCGAGCTCTAT 3753 |||||||||||||||||||||| Sbjct 1216 GGTGGCAGAGCTCGAGCTCTAT 1195 Score = 134 bits (148), Expect = 3e-28 Identities = 79/82 (96%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 1 ATAGAGCTCGAGCTCTGCCACCGCCGGGTAAAACTAATAGAAAAGAAGTACAGCGCTACG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2992 ATAGAGCTCGAGCTCTGCCACCGCCGGGTAAAACTAATAGAAAAGAAGTACAGCGCTACG 2933 Query 61 CTTGTACCTTCTTTCACACTAT 82 ||||||| |||||| |||| || Sbjct 2932 CTTGTACATTCTTTAACACAAT 2911 Score = 84.2 bits (92), Expect = 5e-13 Identities = 74/89 (83%), Gaps = 5/89 (6%) Strand=Plus/Plus Query 1 ATAGAGCTCGAGCTC--TGCCACCGCCGGG--TAAAACTAATAGAAAAGAAGTACAGCGC 56 ||||||||||||||| ||||||||||| | |||||| |||||||||||||||| |||| Sbjct 3019 ATAGAGCTCGAGCTCCATGCCACCGCCGTGACTAAAAC-AATAGAAAAGAAGTACGGCGC 3077 Query 57 TACGCTTGTACCTTCTTTCACACTATTCA 85 |||||| |||||||||| | |||| Sbjct 3078 TACGCTGCCGTCTTCTTTCACCATCTTCA 3106 Score = 78.8 bits (86), Expect = 2e-11 Identities = 59/66 (89%), Gaps = 5/66 (8%) Strand=Plus/Minus Query 3692 AGCGTAGCGCTGTACTTCTTTTCTATTAGTTTTA--CCCGGCGGTGGCA--GAGCTCGAG 3747 |||||||||| |||||||||||||||| |||||| | ||||||||||| ||||||||| Sbjct 3083 AGCGTAGCGCCGTACTTCTTTTCTATT-GTTTTAGTCACGGCGGTGGCATGGAGCTCGAG 3025 Query 3748 CTCTAT 3753 |||||| Sbjct 3024 CTCTAT 3019 >seq6189 Length=3579 Score = 327 bits (362), Expect = 3e-86 Identities = 923/1390 (66%), Gaps = 67/1390 (5%) Strand=Plus/Minus Query 831 TCTCCAACAACCATGGCCCCTCTTGTTCCTTTCCACACTATGGACCGTCAGTGGGACGCA 890 |||| |||||||| | ||| | || || |||||||| ||||| | ||| |||||||| Sbjct 3071 TCTCGAACAACCAAGCAACCTAT-GTCCCGTTCCACACCATGGAGCATCAATGGGACGCT 3013 Query 891 CGCTTCAATGTACCTACCGATGAAGATCTCGAGGCTCTCCTTCTCAATG-TCAAGAGCGA 949 || ||||| |||| || || |||||||| | | || | || | ||||| || Sbjct 3012 CGTTTCAA-GTACTGACAACGGAGGATCTCGACAATGTTCT-CGCAGCGATCAAGTATGA 2955 Query 950 AGTTGACCAAGGAAAGTTCCAATACTGCCTCGTCGGTGGAGTAGAGATCGGTGATCGTCC 1009 | | ||| | ||||||| ||| ||||| ||||| || ||||| ||||| || || Sbjct 2954 GGCTAGTCAAAGCAAGTTCCCTTACGTTCTCGTAGGTGGCGTCGAGATTGGTGACCGCCC 2895 Query 1010 TTACCAAACGGACTACCTCATCAAGCACGTGCACGTAGCTCTGGTGTACAATAACCGCGT 1069 || || | ||||| || |||||||||| || || || | ||| || || || Sbjct 2894 GTATCAGAACGACTATCTGCTCAAGCACGTCCATTGCGCATTGATCTACGCGAATCGAGT 2835 Query 1070 CTCGAAGAACTCCGTGCTGAAGAATCTTCAAATCAAGCAAGGCAATGGCTATTACCTTGT 1129 ||| || | |||| | || |||||||| | | || |||||| | || || || || Sbjct 2834 CTCCAAAAGCTCCATCCTCAAGAATCTCAATGTGAAACAAGGCCTTTATTACTATCTCGT 2775 Query 1130 TCCACGTAACCGTGATCTGCCTATCCAAGGCTGGATCGATCATCAC-ACCAAGTCAAA-- 1186 ||||| || | || | || | | |||||| || | || |||| |||||| Sbjct 2774 CCCACGCAAGGGCGACC---CTTTGTATT-CTGGATG--TCGTGACCACCATGTCAAACC 2721 Query 1187 --AACGAAAA-TCAACGAGGACTTCAAGCTGTATGAGTACGGCACTCTACCTGCTGACAA 1243 || ||||| | ||| || | | ||| | || | || | || || ||||| Sbjct 2720 ACAAGGAAAAGTGAACAGCGAGTACGTGCTTTTCGAACAAGGAATGCTTCCGTAAGACAA 2661 Query 1244 ACCCAATATCTCTGCTCAAGTGACCAAGAGATCGCCAGAGGAAAAGAAGAGAAAACTTGA 1303 | | || | | |||| | | || | |||| ||||| | ||||| || Sbjct 2660 AGA-AGTAACGGTTATCAAACGCTCT-GAATT----AGAG---AAGAAACGCAAACTCGA 2610 Query 1304 CGATGTCATCAAGGAGATGCGAGGCATGATCGAAGAAGG--ACGCGAAGAGGAAGCCTTC 1361 |||||| |||| |||||||| | ||| |||| ||||| | || |||| |||||| Sbjct 2609 CGATGTAATCAGAGAGATGCGCGCGATGCTCGATGAAGGGAAAAAGATAAGGA-GCCTTC 2551 Query 1362 ACCAAGTTTCCTCGAAACTA-CTTGACCTATGGAGAAAAGCTGAAAGCTATGATCTCACA 1420 |||||||||| ||| ||| ||| | | || ||||| | ||||| ||| | || Sbjct 2550 GCCAAGTTTCCCAGAAGCTATCTTCATTTC-GGCGAAAAAATCAAAGCCATGCTTAACCA 2492 Query 1421 GCGTCGTGACTTTTTCAAGAGCAACGGTGACCCTCACATCTGGCTTACTGGTACTCCTGG 1480 ||||| ||||| |||||| ||| || |||| ||||| ||||||| ||| ||||| Sbjct 2491 ACGTCGCGACTTCTTCAAGTCCAAAGGACACCCACACATTTGGCTTAAAGGTCTGCCTGG 2432 Query 1481 TTCTGGCAAGTCTGCCATCTTGCAGGTCATCTATCCTGCGTATTACAACAAGAATCTGGA 1540 ||| || ||||||| | ||||| |||| || | || |||||||||| ||||| Sbjct 2431 AAGTGGTAAAAGTGCCATCCTTCAGGTGGTCTACCCAGACTACTACAACAAGAGCCTGGA 2372 Query 1541 CAACCGTTTCTTCGACTTGTACCAGCCAAAAGTGCACACGCACATGCTTCTTCAAGATGT 1600 || ||||||| | ||| | | | | || |||||||||||||||| || | |||||||| Sbjct 2371 CACCCGTTTCATGGACCTATTCAATCCCAAAGTGCACACGCACACACTCTTGCAAGATGT 2312 Query 1601 CGATCACACGACGGTTGAAAAGTTGGGAGTCCAGTTCCTAAAGACCATCTGTGACGAAGC 1660 ||||||| || || ||| | || || ||||| || || || | |||| ||||| Sbjct 2311 TGATCACAGAGTTGTCGAGAAGCTCGGTGTACAGTTTCTCAAAACACTATGTGGCGAAGT 2252 Query 1661 TGGTTTCCCAGTTGACCAAAAGTACAAGACGCCGCAACTGGCTCGTACCACTG-TCTTGG 1719 || ||| || | ||||| |||| |||| || ||| | ||| | || || | || | | Sbjct 2251 TGTTTTTCCTTTGGACCAGAAGTTCAAGGCGGTGCAGCCTGCTAGGACGACGGTTCGTCG 2192 Query 1720 TCTCTTCCAACTTCACCATCAACGATGTGATTCCGGAAGACATGCCAGGACGCAATGAAA 1779 | | || ||||| || ||| || |||| | || ||||||||||| | || | || | Sbjct 2191 TTTTGTCGAACTTTACGATCGACAATGTTCTCCCAGAAGACATGCCTGACCGGACAGAGA 2132 Query 1780 ATCTAACGGCTCTGCGTCGTCGCTTCTATGAAGTGAACGTTCGTGTTCTTT-TGCAGATA 1838 |||| | || ||||||||||||||| ||||| || || | |||| | || || Sbjct 2131 ATCTGATTGCGTTGCGTCGTCGCTTCTGGGAAGTAGACAGCCG-CTCCTTTCTACAAATC 2073 Query 1839 CTCGGACTGAAGCTTCTGTCGAAGTACGAACTGAACGGCTTGAAACGC--GTGGGAAATC 1896 ||||| | ||||| || |||||||| |||| | ||| | | |||| | Sbjct 2072 CTCGGTGTCAAGCTACTTGATAAGTACGAGTTGAA------GTAACCCAAGAAAGAAAGC 2019 Query 1897 AA----GATCCAACCAAACTCTTCATGTCGTGGGATTACACTCGTGACATTCCCACTGGA 1952 || |||||| ||| |||| || ||||||| || |||||| ||||| || | Sbjct 2018 AACATGGATCCACGCAAGATCTTTATCACGTGGGACTATGGTCGTGATATTCCAACAGCC 1959 Query 1953 GAGTCGTTGAAGACTGCCAAGGAATACCAGCAGATCATCAAGGATCACTACTACGGAACG 2012 || | | |||||| ||| ||||| ||||| | ||| ||||| | | | Sbjct 1958 GAAGAACTCCCATCAGCCAAGACGCTCCAAGAGATCGTCAAGAACCACCACTACAGTAAG 1899 Query 2013 AACACTTCGCCTCACTCGAGTCAGTAAGTAAAAGACGATGTGGGACTTAACACTGCCAGG 2072 ||| || || |||| | | ||||||||||||| || ||||| Sbjct 1898 -ACAGTT-GC-------------GTAATT-----GCAATGTGGGACTTAAGTCTCCCAGG 1859 Query 2073 ATACAAGTATCTAGGACCAGGAAACAAACTTGACAAGGGAGAATCAAATAACGAGAATGA 2132 || | ||||||||| |||||||||| ||| | || || | | | || || || || Sbjct 1858 CTATAGGTATCTAGGCCCAGGAAACATACTCAATAAATGACCACCTGAAAATGAAAACGA 1799 Query 2133 CAGAGTTGCTTTAGCACATGATATTGCTTATGAT-TTCTTGGaaaaaaaaGGATTCAATC 2191 ||| ||||| | || |||||||| || ||| ||||| || |||| | ||| ||||| Sbjct 1798 TGAAGTGGCTTTGGTTCACGATATTGCGTACGATATTCTT-GAGAAAATAAGATACAATC 1740 Query 2192 CATATACACA 2201 |||| ||||| Sbjct 1739 CATACACACA 1730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 11896713424310