Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1821 98.7 3e-18 seq4952 84.2 7e-14 seq2067 80.6 8e-13 >seq1821 Length=1616 Score = 98.7 bits (108), Expect = 3e-18 Identities = 68/76 (89%), Gaps = 2/76 (3%) Strand=Plus/Minus Query 422 CCATTCGCAGTTTCACTGTATAGAT--TGCTTATACTTAGACATGCATGGCTTAATCTTT 479 |||||||||||||||| ||| | | || |||||||||||||||||||||||||||||| Sbjct 76 CCATTCGCAGTTTCACAGTACAAAACGTGTTTATACTTAGACATGCATGGCTTAATCTTT 17 Query 480 GAGACAAGCATATGAC 495 ||||||||| |||||| Sbjct 16 GAGACAAGCGTATGAC 1 >seq4952 Length=30950 Score = 84.2 bits (92), Expect = 7e-14 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAAC 403 ||||||||| ||||| ||||||| ||||| ||| | |||||||||| ||| | | || Sbjct 28122 GCATGTATTTGCTCTTGAATTACTACGGTAATCGTAGCAGTAAGGTACCATCGAGTGGAC 28181 Query 404 GATAACTGATTTAATGAGCCATTCGCAGTTTCAC 437 |||| |||| | |||||||| ||||||||||| Sbjct 28182 TATAATTGATATGTTGAGCCATACGCAGTTTCAC 28215 >seq2067 Length=6633 Score = 80.6 bits (88), Expect = 8e-13 Identities = 90/119 (76%), Gaps = 6/119 (5%) Strand=Plus/Minus Query 160 TTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAAT 219 ||||||||| || |||||||||||| || ||||||||| |||| ||||||||||||||| Sbjct 936 TTACCCGTTAATGCCATGGTAGGCCCATACCCTACCATCCAAAGCTGATAGGGCAGAAAT 877 Query 220 TTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCA 278 | | || ||||| || ||| ||||| || ||||||||||| ||| || Sbjct 876 TCAATCGATTTATCGC--GCAAAAG----CGCGATCCGCACAGTTATTATGACTCAACA 824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510298440704