Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509505.1_202013-12- 18] 6,724 sequences; 47,809,385 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4771 255 5e-63 seq4691 226 2e-54 >seq4771 Length=9300 Score = 255 bits (282), Expect = 5e-63 Identities = 1092/1697 (64%), Gaps = 69/1697 (4%) Strand=Plus/Minus Query 65123 TAGTACATGCCGGTCTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTT 65182 |||||||||||||||||||| || |||||| || || ||||| || | | | || Sbjct 4770 TAGTACATGCCGGTCTTGAGTCCCTTCTTCCAAGCGTAAAAGTGCATGGACG-TCAGCTT 4712 Query 65183 GCATA-ATTCGGCTCGGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACC 65241 | | | |||| ||||| | || || ||||||||||||||||| ||| ||| || Sbjct 4711 ACTGATAGTCGGGTCGGCGATGTGGATGTTCAACGACTGACTCTGGCAGATATAAGCGCC 4652 Query 65242 ACGATCTGCAGCCATGTCAATGATACGACGTCCCGAT--ATCTCCCAGACGGTCTTGTAC 65299 ||| || || | || ||| | || || | | | | | |||||||| || ||||||||| Sbjct 4651 ACGGTCAGCCGACAGGTCCA-GA-ACAGCCTTCTGCTTGATCTCCCACACCGTCTTGTAC 4594 Query 65300 AGGCGACGTACC-TCAATTGGAATCTCCTCAATGTCCTGGACTGAACCACGA-CGTGCAA 65357 | | || | ||| ||||| |||| | | ||| || || |||| | | | || Sbjct 4593 TT-CTCCTTAACATCATCCGGAATGTCCTTGACCTTCTGCACCGAGCCACCATCATTCAG 4535 Query 65358 TAATGCGATTACGCATCGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGT 65417 ||| ||||||| | | | ||| | || | |||||||| | | | || | Sbjct 4534 -AATCTGATTACGTACTTCCGGCGTCCAAATGCCGAGCTCGATAAGCTCCTTCATCAGAT 4476 Query 65418 GACGATTGATGAC--TTG-GAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACG 65474 || ||| | || | | |||||| || | || ||||||||| || |||||||||| Sbjct 4475 -AC--TTGTTAACGATCGTGAACTCACCAGCCAAAACACGACGGTTGTACATGTTGGACG 4419 Query 65475 TGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGG 65534 || || || | || || ||||||| || || || || || || || || ||||||| Sbjct 4418 TGTAAGGCTCGATAGACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCTGTCGGCATGG 4359 Query 65535 GAGCGACCAACAATGAGTTTCGCAATCCGTTCATTTCA--ATGTTGTGACGCAATTCGTC 65592 | || |||| || ||||| || | |||| ||| | | || | | | || | Sbjct 4358 GTGCAACCAGCAGCGAGTTACGGAGACCGTG--TTTGATGACGTCATCTTTTAGTGCGGC 4301 Query 65593 CCAGTTCCACATCG--GTTTATCGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTT 65650 ||||||||| | | | | | || ||| |||||| || || | | | Sbjct 4300 CCAGTTCCAAAGCCCAGATGAAGGTGTG-----ACGCCCCACATGTCGAACTGGAAGATA 4246 Query 65651 CCGATACTGGCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGA 65710 || |||||||||| || || |||| | ||||| ||| ||| |||||| | Sbjct 4245 CCCTTACTGGCCGGAGAGCCCTGGAACGTCTCGTAAGGACCCAATTCCGTGGCAATCTC- 4187 Query 65711 CAGCTG-GTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACG 65769 || | ||||| | || ||||| || || |||||||| ||| || | |||||| Sbjct 4186 CATCGACGTCTCCATGGCAGCAAAGTAGATCGTCTCGAAGATGTTCTTGTTCAATTCACG 4127 Query 65770 TGCCTCATCGCTCTCGTACGGCATACC-CATCAGGACAAAAGTGTCGGCCAGACCTTGAA 65828 || | ||||||| ||| | || ||| |||| || | || |||||||| || | Sbjct 4126 AGCTTGTGGGCTCTCGAACG-CGTAGTTCATGAGGATGAACGCATCCGCCAGACCCTGGA 4068 Query 65829 CTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGT 65888 | |||||||| ||||||||||| |||| ||||| | ||||| | ||||| || | Sbjct 4067 CGCCAATACCAATGGGACGATGGCGCATGTTGGACTTGCGAGCCTCTGCAACAGGATAAT 4008 Query 65889 AATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGA-----TAC-GTC 65942 | |||| ||||| | || | ||||| || | ||| | || | ||| ||| Sbjct 4007 AGTTGACGTCGATGACCTTGTTAAGGTTGCGCGTGATCACCTTGACCACCTCATACAGTC 3948 Query 65943 GCAATTGT--TCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTT 66000 | |||| ||||| || | |||| |||||||| | Sbjct 3947 TC--TTGTAGTCGAA--CACACCGTTTT----------------------CCACAAACAT 3914 Query 66001 GGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGAC 66060 || || || | ||| || | |||||| || || | ||| || || | || ||||| | Sbjct 3913 AGGCAGCGCCACAGACGCCAAGTTGCACACTGCCACCTCATCGGGTGACGTGTACTCCAT 3854 Query 66061 AATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCG 66120 | |||| ||| | || ||| | || || || ||||| ||||| || || |||||| Sbjct 3853 GACTTCGCAGCATAAGTTGCTGGAACGGATCGTACCCAAGTTCTGCTGGTTCGACTTGCG 3794 Query 66121 ATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGAT 66180 || ||| |||||||| | |||| | || || ||||||| || | || | ||| Sbjct 3793 GTTAGCTGCGTCCTTGTAGAGCATGAAGGGCACTCCCGTCTCAATCTGAGCGTCTAGGAT 3734 Query 66181 GGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTAC-CGCCCTACCTTTGCGTTCGTAAT 66239 ||| ||| || | || || | || | ||| ||| | |||| ||||| | Sbjct 3733 AGCGAACCACAGCTGCTGAGCGTTGATTGT-CTTACGCGCACGTCCTTCCTTCTCGTACT 3675 Query 66240 GTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTG 66299 ||| || || ||| || || ||||| ||| |||||| ||| | || | Sbjct 3674 TTTCATACAGAGCTTCAAACTCATCGCCCCAGCACTCGTACAGACCAGGAGCTTCGTTGG 3615 Query 66300 GACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCC 66359 |||| | || ||| | |||| || || | ||| || |||||||| | || Sbjct 3614 GACAGAACAAACTCCACTTGCCATTGGCCTCCACTCTCTTCATGAAGAGATCAGGCACCC 3555 Query 66360 AGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGT 66419 | || ||||| || | ||||| || || ||| |||| | ||||| || || |||| | Sbjct 3554 ACAGCGCGTAAAACAAGTCGCGGGCGCGGTGCAGCTCATTACCGTGGTTCTTACGCAGAT 3495 Query 66420 CGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATAC 66479 | |||||||| || | |||||| ||||| || |||| |||||| |||||||||||| | | Sbjct 3494 CCAGGAACTCGAACACGTCGGCGTGCCACGGCTCCAAGTAGATAGCGAACGAGCCCTTGC 3435 Query 66480 GTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTA 66539 | || || || || ||||| || |||||||| | ||| || ||||||||||| || | Sbjct 3434 GCTTACCTCCGCCCTGGTCCACATAGCGAGCCGTGTCGTTAAACACACGCAACATGGGGA 3375 Query 66540 CGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCG 66598 | |||||||| ||| || |||||| ||| | | | | || || || || | | Sbjct 3374 TAATGCCGTTAGAGGAGCCGTTCGTGCCGCGGAT-GTAGCTGTTAGTGGCGCGGATGTTG 3316 Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTC 66658 || | | | | ||| ||||| || ||| || ||||| || || | | || Sbjct 3315 TGCATACTGATACCGATACCGCCCGCCCATTTAGAGATACAGGCGCATTGCTTTAGGGTG 3256 Query 66659 CGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGG 66718 | | ||||| ||||| |||||| ||| || | || ||| |||| ||| | || Sbjct 3255 TCGTAAATGCCCTCAATAGAGTCATCCTGCATAGCCAATAGGAAGCAAGAAGACAACTGA 3196 Query 66719 GGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGAC 66778 || || ||| |||| |||||| || || || |||||||| ||| | | | ||| Sbjct 3195 GGACGTGGCGTGCCGGCGTTGAAGAGAGTAGGGGTGGCGTGCGTGAAGAACTTCTGCGAC 3136 Query 66779 ATGTAATTGTACGTCTC 66795 ||| | ||||||||| Sbjct 3135 ATGAGCTCGTACGTCTC 3119 >seq4691 Length=143056 Score = 226 bits (250), Expect = 2e-54 Identities = 600/893 (67%), Gaps = 39/893 (4%) Strand=Plus/Plus Query 61054 CGTTTCGTATTGTTCCCCATCGAGTATGAGGATATTTGGCGCATGTACAAAAAGGCGGAA 61113 |||||||| |||||||||| || | | || | |||| |||||||| || || || Sbjct 52906 CGTTTCGTGCTGTTCCCCATTCAGGAACACGAAGTGTGGCAGATGTACAAGAAAGCCGAG 52965 Query 61114 GCTTCCTTCTGGACGGTGGAGGAGGTCGAT-TTGTCCAAAGACATGAATGACTGGGAGC- 61171 || ||||||||||||| |||||| |||| |||| || ||| | || |||||| ||| Sbjct 52966 GCCTCCTTCTGGACGGCTGAGGAGCTCGACCTTGTGCAC-GACCTCAAGGACTGG-AGCA 53023 Query 61172 -GTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCG 61230 | | | || | || | ||| ||||| || || ||| | || ||||| || || Sbjct 53024 AGCTCACGGA-CAACGAGCGACACTTCATCAAGCACGTGCTCGCCTTCTTCGCAGCCAGT 53082 Query 61231 GACGGTATCGTCAATGAGAATTT----ATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTC 61286 ||||||||||| || ||||| || || |||| ||| | || ||||| ||| | Sbjct 53083 GACGGTATCGTGAACGAGAACTTGGCCAT--GAAC--TTCAGCAACGAAGTGCAGGTGCC 53138 Query 61287 GGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTA 61346 ||||| ||||| ||||| ||||||||||| ||||| ||||| | ||||||||| | || Sbjct 53139 CGAGGCTCGTTGCTTCTATGGCTTCCAGATCGCCATTGAGAACATTCACTCGGAGGTCTA 53198 Query 61347 CAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCG-GAACGTGAACGAT-TGTTCAA 61403 | | ||||| || |||||||||| ||| ||| || ||| | || || | | Sbjct 53199 CTCACTGCTCATTGACACGTACATCAAGGACGCGATCGAGAA---GGACCATCTCCTGCG 53255 Query 61404 TGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-A 61462 |||||| ||||| || || || | | ||| || | ||||| |||| ||| | | Sbjct 53256 TGCCATTGAGACCATCCCTTGTGTCACGAAGAAGGCTCACTGGGCACTCAAGTGGTGCGA 53315 Query 61463 CC--AGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGT 61520 || || | | || | | || || ||||||| || || | || || || | Sbjct 53316 CCCGCGTGTATC--CT-CCTACCCGGAGCGCCTGCTGGCTTTCGCTGCTGTGGAAGGCAT 53372 Query 61521 ATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGG 61580 || ||| || || || | | ||||||||| | ||||| || || || |||||||| Sbjct 53373 CTTCTTCTCGGGCTCTTTCTGCTCCATCTTTTGGCTAAAGAAGCGCGGCCTCATGCCCGG 53432 Query 61581 TCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTG-CTG 61639 ||||| |||| || ||| | || || |||||||||||||| || || | ||| Sbjct 53433 TCTGAGCTTCTCGAACGAGCTCATCAGTCGTGACGAGGGCATGCACACGGACTTCGCCTG 53492 Query 61640 --TTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTGGGTGAGAT 61697 ||||| || || | | ||||| | | | | ||| ||||| ||||| Sbjct 53493 CCTTTTG-TACTC-----CAAGCTGGTCACCAAGCTGCCAGAGAGCCGTGTACACGAGAT 53546 Query 61698 TGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACT 61757 ||||||| || || || || || || ||| || |||| | | || || || Sbjct 53547 CATTCGTGACGCTGTGGTGATTGAGCACGAGTTTGTGCGTGACTCGCTCCCTGTGGAGCT 53606 Query 61758 CATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG-- 61815 || || ||||| | || || |||| ||||| ||||| || || || ||||||||| Sbjct 53607 GATTGGTATGAACTCTGCCCTCATGTGCCAGTACATTGAGTTCGTGGCTGACCGTCTGCT 53666 Query 61816 TTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGAC 61875 | ||| || ||| || |||||| | | || ||||| ||||| | |||||| Sbjct 53667 CTACTCGCTT--GGTGTGTCCAAGATCTACCACGCTAAGAACCCTTTTGACTGGATGGAC 53724 Query 61876 ATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTA 61928 ||||| || || | |||||||| || ||||||||||| ||||| ||||| || Sbjct 53725 ATGATCTCTCTCCAAGGCAAGACCAACTTTTTCGAGAAGCGTGTGGGCGAGTA 53777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397535419799360