Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20parasitica_20[genbank_20GCA_5F000509525.1_202013-12- 18] 6,791 sequences; 47,716,731 total letters Query= NC_031927.1 Length=216121 Score E Sequences producing significant alignments: (Bits) Value seq4916 107 3e-18 >seq4916 Length=47189 Score = 107 bits (118), Expect = 3e-18 Identities = 345/531 (65%), Gaps = 6/531 (1%) Strand=Plus/Plus Query 162310 CCAGATGAAATATATAACCTAGGGGCTCAGAGTCACGTTAAGGTTTCATTTGATCAGCCT 162369 ||||| ||| | || ||||| || || | ||||| || || || || || | | | Sbjct 40367 CCAGACGAAGTGTACAACCTGGGAGCAATGTCCCACGTGAAAGTCTCCTTCGAACTGGCC 40426 Query 162370 GAATACACAGCACAGACCGACGCATTGGGCACTCTAAGGGTGCT-AGAAGCCGTCCGTCT 162428 ||||||||||| | |||||| || ||| |||| | |||| | |||| | | Sbjct 40427 GAATACACAGCGGATGTCGACGCTTTAGGCGCTCTCCGCCTGCTCACAAGCTTGCGAACA 40486 Query 162429 TCTTGGTATGGA--ATCATACGTAAGAATCTACCAAGCGAGCACCAGTGAGCTTTATGGG 162486 | | || | || || ||| ||| ||||||||||| || || ||| | ||||| Sbjct 40487 TGT-GGCCTCGAGCATTCCACG--AGATTCTACCAAGCGTCTACAAGCGAGTTATATGGT 40543 Query 162487 CTAGTTCAGGAGACACCCCAGAAAGAAACCACTCCAATGTATCCACGATCCCCTTATGGA 162546 ||| || | ||||| ||| | || | ||| ||| | ||||||| || || ||||| Sbjct 40544 AAAGTACAAGCCACACCACAGGATGAGAACACACCATTCCATCCACGTTCACCCTATGGG 40603 Query 162547 GTTGCTAAACTATATGGGTTCTGGATCATCAAAAACTACAGGGAAAGCTATGACATACAT 162606 || || || | || || | |||| | ||| | | ||| |||| || | Sbjct 40604 GTGGCAAAGCAATTTGCCTATTGGAGTGTAGTTAACCATCGCGAAGCTTATGGTATGTAC 40663 Query 162607 GCCTCTAGCGGTATTCTATTCAATCACGAAAGCTCACGCAGAGGAGAGACGTTCGTCACA 162666 ||| || ||| ||||||||||| ||||| || | || | ||| || || ||||| Sbjct 40664 GCCGTTAACGGGATTCTATTCAACCACGAGAGTCCTCGACGCGGACCAACTTTTGTCACG 40723 Query 162667 CGCAAGATCGTCCGAGCCTTGTCCCGAATTAGTGTGGGACTCCAAAGTGATCTACAACTT 162726 || || ||| |||||| || || ||| | ||| || | || || | Sbjct 40724 CGTAAAATCACTCGAGCCGTGGTGCGTATTCACGCTGGAATCGAGAGCTGCCTGTTTATA 40783 Query 162727 GGAAACCTCAATGCCCGACGTGACTGGGGACACGCCAAAGACTACGTAGAGGCTATGTGG 162786 || |||||| | |||| || |||||||| ||||| ||||||||| || ||||||| Sbjct 40784 GGCAACCTCGACGCCCAGCGCGACTGGGGCCACGCTCGAGACTACGTGGAATGTATGTGG 40843 Query 162787 TTGATGCTTCAGCAAGAGAAGCCAGATGATTATGTGATCGCAACTGGTGAG 162837 ||||| ||||| || | || || |||| ||| | || ||||| ||| Sbjct 40844 CGAATGCTACAGCACGACACTCCCGAGGATTTCGTGGTTGCCACTGGAGAG 40894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691400503757160