Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phytophthora_20pinifolia_20[genbank_20GCA_5F000500225.2_202016-07- 21] 36,928 sequences; 94,617,303 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq32142 109 3e-22 seq2459 82.4 4e-14 seq4961 80.6 1e-13 >seq32142 Length=9645 Score = 109 bits (120), Expect = 3e-22 Identities = 96/119 (81%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAA--AATGATAACATCGC 58 ||||||||||||||||||||||| || ||||| || |||| || | ||| | Sbjct 2142 GAACCCAAAGACTTTGATTTCTCATACGGTGCTGACAAGGTCATTTAAAGTAAACGACTG 2201 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 || ||||| ||||||||||||||| |||||||||||||| ||||||| ||| ||||||| Sbjct 2202 CCAATCCCGAGTCGGCATAGTTTATGGTTAAGACTACGATGGTATCTAATCATCTTCGA 2260 >seq2459 Length=3073 Score = 82.4 bits (90), Expect = 4e-14 Identities = 73/90 (81%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 28 GGTGCCGAGCGAGTCAAAATGATAACATCGCCCGATCCCTAGTCGGCATAGTTTACGGTT 87 |||||| | | ||||| || | | | | | | |||||| |||||||||||||||| ||| Sbjct 2811 GGTGCCAAACAAGTCATTATAA-ATCCTTGTCTGATCCCCAGTCGGCATAGTTTACTGTT 2869 Query 88 AAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||||| ||||||||||||||| || || Sbjct 2870 AAGACTACAACGGTATCTGATCGTTTTTGA 2899 >seq4961 Length=238 Score = 80.6 bits (88), Expect = 1e-13 Identities = 85/111 (77%), Gaps = 2/111 (2%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAA--AATGATAACATCGC 58 ||||||| || |||||||||||| || | ||| || |||| || | ||| | Sbjct 113 GAACCCACAGGCTTTGATTTCTCATACGATGCTGACAAGGTCATTTAAAGTAAACGACTG 54 Query 59 CCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATC 109 || ||||| ||||||||||||||| |||||| ||||||| ||||||| ||| Sbjct 53 CCAATCCCGAGTCGGCATAGTTTATGGTTAATACTACGATGGTATCTAATC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278303617920